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UCSC Genome Browser Project Staff:
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Jim Kent: Research Scientist,
co-director of UCSC Genome Browser project.
Design and implementation of the
Genome Browser and the
BLAT
sequence search tool. Author of the
the UCSC Known Genes annotations,
the Gene Sorter,
VisiGene,
Genome Graphs, chaining
and netting programs, the In
Silico PCR tool, and the
GigAssembler.
Implementation of many Genome Browser annotation tracks,
including FPC contigs, assembly, gap, coverage,
known genes, full mRNA, spliced ESTs, human ESTs,
Genscan genes, non-human mRNA and EST, and mouse BLAT.
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Galt Barber:
Genome Browser engineering. VisiGene, Genome Graphs,
parasol, ENCODE submission pipeline.
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Hiram Clawson:
Genome Browser engineering. New and updated organism
browsers, wiggle tracks, genomeWiki, wikiTrack,
mirror and licensing technical support, modENCODE.
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Mark Diekhans:
Technical engineering lead and PhD student. MGC project
CCDS, Genome Browser GenBank data pipeline, Gencode.
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Tim Dreszer:
Genome Browser engineering. ENCODE, guinea pig browser.
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Pauline Fujita:
Genome Browser QA, mailing list support.
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Rachel Harte:
Genome Browser engineering. CCDS and MGC curation,
Zebrafish browser.
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Angie Hinrichs:
Genome Browser engineering. SNPs and variation data,
insect, chicken and dog browsers, modENCODE, Table
Browser, session management.
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Fan Hsu:
Director of Proteomics. Cancer browser projects, GSID,
Proteome Browser, Known Genes.
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Donna Karolchik:
Genome Browser project and engineering management,
documentation, web content, Genome Browser licensing,
training/outreach coordinator.
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Robert Kuhn:
Genome Browser QA manager, project outreach, mailing
list support.
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Larry Meyer:
Genome Browser engineering. ENCODE, UI, horse browser.
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Mike Pheasant:
Genome Browser engineering. ENCODE, RNA tracks.
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Andy Pohl:
Genome Browser engineering. Microarray data, LiftOver,
ENCODE.
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Thomas Pringle:
Technical advisor on Proteome Browser
project, avid Genome Browser user, constant source of ideas
for improving and expanding project functionality.
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Brooke Rhead: Genome Browser QA,
mailing list support.
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Kate Rosenbloom:
ENCODE DCC technical project manager and Genome Browser
engineering. ENCODE DCC and pilot projects, multiz
and conservation alignments, custom track manager.
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Kayla Smith:
Genome Browser QA, mailing list support.
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Ann Zweig:
Genome Browser QA, mailing list support.
Post-docs and Graduate Students (Browser-related support):
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Robert Baertsch:
Graduate student - Synteny, pseudogenes, orthology;
Genome Browser support.
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Steve Benz:
Graduate student - Cancer genomics browser.
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Craig Lowe:
Graduate student - Contribution of transposons to the
evolution of the human genome.
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Jian Ma:
Post-doctoral scholar - Reconstruction of chromosomal
rearrangements and segmental duplications.
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Benedict Paten:
Graduate student - ENCODE DAC, comparative genomics and
evolutionary analysis.
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Brian Raney:
Graduate student - Comparative Genomics, MAF, Ciona
Browser, Genome Browser engineering.
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Krishna Roskin:
Graduate student - Phylogenetic analysis, Genome
Browser database support, early Table Browser support.
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Zack Sanborn:
Graduate student - Cancer genomics browser.
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Bernard Suh:
Graduate student - Reconstruction of evolutionary
trees.
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Ting Wang:
Post-doctoral scholar - ENCODE, epigenomics data, cancer
genomics browser.
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Jing Zhu:
Post-doctoral scholar - Cancer genomics browser.
Systems Administration Staff:
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Jorge Garcia:
Systems administrator. Co-designer of the KiloKluster.
Chief hardware bug finder. Web, mail, laptop and
general systems support.
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Victoria Lin:
Systems administrator.
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Chester Manuel:
Systems administrator.
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Erich Weiler:
Systems administrator.
Center for Biomolecular Science and Engineering
(CBSE) Staff:
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David Haussler: CBSE Director, HHMI
investigator, co-director of UCSC Genome Browser project.
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Ann Pace:
CBSE Assistant Director. Grants, budget, space and
other administrative support.
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Vege Clerisse:
Executive Assistant.
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Katy Elliott:
Administrative Manager.
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Zia Isola:
Associate Director for CBSE Diversity Programs.
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Ruth Rabinowitz:
Receptionist, administrative assistant.
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Branwyn Wagman:
CBSE/QB3 Communications Coordinator, HR.
We gratefully acknowledge the help of former UCSC genome
team members Gill Bejerano, Mathieu Blanchette, Trevor
Bruen, Brenna Candelaria, Mike Chalup, Chad
Chen, Ron Chao, Jenny Draper, Phoenix Eagleshadow,
Terry Furey, Patrick Gavin,
Jennifer Jackson, Scot Kennedy, Andy Kern, Nick Littlestone,
Yontao Lu, Crystal
Lynch, Jakob Pedersen, Katie Pollard, Sanja Rogic, Matt
Schwartz, Chuck
Sugnet, Ali Sultan-Qurraie, Adam Siepel, Paul Tatarksy,
Archana Thakkapallayil, Daryl Thomas, Aaron Tomb,
Heather Trumbower, Sandra Walton,
Ryan Weber, Wei Wu, Matt Xia, Chen-Hsiang Yeang, and Degui
Zhi.
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