./hg/hgTablesTest/hgTablesTest.c
./hg/hgsqlSwapTables/hgsqlSwapTables.c
./hg/pslCheck/pslCheck.c
./hg/useCount/useCount.c
./hg/utils/refSeqGet/refSeqVerInfo.c
./hg/utils/refSeqGet/refSeqGet.c
./hg/utils/refSeqGet/refSeqVerInfo.h
./hg/utils/mdbQuery/mdbQuery.c
./hg/utils/hubCheck/hubCheck.c
./hg/utils/bedMergeExpData/bedMergeExpData.c
./hg/utils/toDev64/toDev64.c
./hg/utils/cageSingleTrack/cageSingleTrack.c
./hg/utils/findCutters/findCutters.c
./hg/utils/overlapSelect/coordCols.c
./hg/utils/overlapSelect/chromAnnMap.h
./hg/utils/overlapSelect/rowReader.h
./hg/utils/overlapSelect/selectTable.c
./hg/utils/overlapSelect/chromAnn.c
./hg/utils/overlapSelect/selectTable.h
./hg/utils/overlapSelect/chromAnnMap.c
./hg/utils/overlapSelect/coordCols.h
./hg/utils/overlapSelect/chromAnn.h
./hg/utils/overlapSelect/overlapSelect.c
./hg/utils/overlapSelect/rowReader.c
./hg/utils/crTreeSearchBed/crTreeSearchBed.c
./hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
./hg/utils/bedRandom/bedRandom.c
./hg/utils/repeatSelect/repeatGroup.h
./hg/utils/repeatSelect/repeatSelect.c
./hg/utils/repeatSelect/rmskOutExtra.h
./hg/utils/repeatSelect/bitHash.h
./hg/utils/repeatSelect/repeatGroup.c
./hg/utils/repeatSelect/bitHash.c
./hg/utils/repeatSelect/rmskOutExtra.c
./hg/utils/tdbQuery/tdbRecord.c
./hg/utils/tdbQuery/tdbRecord.h
./hg/utils/tdbQuery/tdbQuery.c
./hg/utils/agpCondense/agpCondense.c
./hg/utils/bedWeedOverlapping/bedWeedOverlapping.c
./hg/utils/randFrag/randFrag.c
./hg/utils/motifFinder/motifFinder.c
./hg/utils/gff3ToGenePred/gff3ToGenePred.c
./hg/utils/rgdGeneXref2/rgdGeneXref2.c
./hg/utils/wigBedToStep/wigBedToStep.c
./hg/utils/liftUpBedFromTable/liftUpBedFromTable.c
./hg/utils/safePush/safePush.c
./hg/utils/pslMap/pslMap.c
./hg/utils/bedMergeOverlappingBlocks/bedMergeOverlappingBlocks.c
./hg/utils/bedToPsl/bedToPsl.c
./hg/utils/chromGraphFromBin/chromGraphFromBin.c
./hg/utils/bedExtendRanges/bedExtendRanges.c
./hg/utils/mutationClassifier/mutationClassifier.c
./hg/utils/wigAsciiAverageOverBed/wigAsciiAverageOverBed.c
./hg/utils/fiveCToBed/fiveCToBed.c
./hg/utils/twoBitMask/twoBitMask.c
./hg/utils/gtfToGenePred/gtfToGenePred.c
./hg/utils/chromGraphToBin/chromGraphToBin.c
./hg/utils/positionalTblCheck/positionalTblCheck.c
./hg/utils/gff3ToPsl/gff3ToPsl.c
./hg/utils/makeTrackIndex/makeTrackIndex.c
./hg/utils/coloredExonToBed/coloredExonToBed.c
./hg/utils/coloredExonToBed/coloredExon.h
./hg/utils/coloredExonToBed/coloredExon.c
./hg/utils/sqlPerf/sqlPerf.c
./hg/utils/reTraceUtils/reTraceFixMaf/reTraceFixMaf.c
./hg/utils/oligoMatch/oligoMatch.c
./hg/utils/makeTableList/makeTableList.c
./hg/utils/crTreeIndexBed/crTreeIndexBed.c
./hg/utils/gapToLift/gapToLift.c
./hg/utils/pslUniq/pslUniq.c
./hg/utils/hubPublicCheck/hubPublicCheck.c
./hg/sim4big/sim4big.c
./hg/fakeOut/fakeOut.c
./hg/hgSuggest/hgSuggest.c
./hg/pslCoverage/pslCoverage.c
./hg/var/fixConrad.c
./hg/hgPal/hgPal.c
./hg/pslCDnaFilter/localNearBestFilter.h
./hg/pslCDnaFilter/globalNearBestFilter.c
./hg/pslCDnaFilter/hapRegions.c
./hg/pslCDnaFilter/overlapFilter.c
./hg/pslCDnaFilter/globalNearBestFilter.h
./hg/pslCDnaFilter/cDnaReader.h
./hg/pslCDnaFilter/polyASize.h
./hg/pslCDnaFilter/hapRegions.h
./hg/pslCDnaFilter/polyASize.c
./hg/pslCDnaFilter/cDnaAligns.c
./hg/pslCDnaFilter/cDnaStats.h
./hg/pslCDnaFilter/localNearBestFilter.c
./hg/pslCDnaFilter/overlapFilter.h
./hg/pslCDnaFilter/pslCDnaFilter.c
./hg/pslCDnaFilter/cDnaAligns.h
./hg/pslCDnaFilter/cDnaStats.c
./hg/pslCDnaFilter/cDnaReader.c
./hg/hgGetAnn/hgGetAnn.c
./hg/raSort/raSort.c
./hg/pslCDnaGenomeMatch/pslCDnaGenomeMatch.c
./hg/pslRecalcMatch/pslRecalcMatch.c
./hg/makeSeqs/makeSeqs.c
./hg/pslSimp/pslSimp.c
./hg/hgNotYet/hgNotYet.c
./hg/relPairs/relPairs.c
./hg/pslCrudeCmp/pslCrudeCmp.c
./hg/bedSplitOnChrom/bedSplitOnChrom.c
./hg/semiNorm/semiNorm.c
./hg/intronSizes/intronSizes.c
./hg/hgsqladmin/hgsqladmin.c
./hg/genePredToMrna/genePredToMrna.c
./hg/hgsqlLocal/hgsqlLocal.c
./hg/genePredToGtf/genePredToGtf.c
./hg/ratStuff/multizzy/multizzy.c
./hg/ratStuff/mafAddQRows/mafAddQRows.c
./hg/ratStuff/mafToAnc/mafToAnc.c
./hg/ratStuff/mafFilter/mafFilter.c
./hg/ratStuff/segExpandToAnchors/segExpandToAnchors.c
./hg/ratStuff/mafSplit/mafSplit.c
./hg/ratStuff/mafAddIRows/mafAddIRows.c
./hg/ratStuff/mafsInRegion/mafsInRegion.c
./hg/ratStuff/segSplitPairwise/segSplitPairwise.c
./hg/ratStuff/mafMeFirst/mafMeFirst.c
./hg/ratStuff/faToMaf/faToMaf.c
./hg/ratStuff/mafFastFrags/mafFastFrags.c
./hg/ratStuff/mafToProtein/mafToProtein.c
./hg/ratStuff/mafFrags/mafFrags.c
./hg/ratStuff/stageMultiz/stageMultiz.c
./hg/ratStuff/mafOrder/mafOrder.c
./hg/ratStuff/mafSpeciesList/mafSpeciesList.c
./hg/ratStuff/mafStats/mafStats.c
./hg/ratStuff/mafGene/mafGene.c
./hg/ratStuff/mafFrag/mafFrag.c
./hg/ratStuff/mafSpeciesSubset/mafSpeciesSubset.c
./hg/ratStuff/mafSplitPos/mafSplitPos.c
./hg/ratStuff/mafOrtholog/mafOrtholog.c
./hg/ratStuff/mafBreak/mafBreak.c
./hg/ratStuff/mafIndex/mafIndex.c
./hg/ratStuff/segInfo/segInfo.c
./hg/ratStuff/mafBedSubset/mafBedSubset.c
./hg/perf/hgTracksRandom.c
./hg/perf/rangeQuery.c
./hg/xmlToSql/xmlToSql.c
./hg/xmlToSql/tables.c
./hg/xmlToSql/tables.h
./hg/xmlToSql/rename.h
./hg/xmlToSql/rename.c
./hg/xmlToSql/elStat.c
./hg/xmlToSql/elStat.h
./hg/fqToQa/fqToQa.c
./hg/pslFilterBadCdna/pslFilterBadCdna.c
./hg/genePredToMafFrames/mkMafFrames.h
./hg/genePredToMafFrames/orgGenes.c
./hg/genePredToMafFrames/mkMafFrames.c
./hg/genePredToMafFrames/frameIncr.h
./hg/genePredToMafFrames/splitMultiMappings.h
./hg/genePredToMafFrames/finishMafFrames.h
./hg/genePredToMafFrames/finishMafFrames.c
./hg/genePredToMafFrames/orgGenes.h
./hg/genePredToMafFrames/genePredToMafFrames.c
./hg/genePredToMafFrames/splitMultiMappings.c
./hg/borfBig/borfBig.c
./hg/xmlCat/xmlCat.c
./hg/bedOverlap/bedOverlap.c
./hg/pdbSP/pdbSP.c
./hg/fakeFinContigs/fakeFinContigs.c
./hg/pslUnpile/pslUnpile.c
./hg/extractPslForLfs/extractPslForLfs.c
./hg/hgNotAvail/hgNotAvail.c
./hg/pslPseudo/checkExp/checkExp.c
./hg/pslPseudo/pslPseudo.c
./hg/agpCloneList/agpCloneList.c
./hg/autoSql/commonSh.c
./hg/autoSql/eztok.c
./hg/autoSql/tests/testHarness.c
./hg/autoSql/tests/testSymCols.c
./hg/autoSql/tests/jsonTest.c
./hg/autoSql/tests/dbLinkTest.c
./hg/autoSql/tests/expected/mainTest.h
./hg/autoSql/tests/expected/newTest.c
./hg/autoSql/tests/expected/newTest.h
./hg/autoSql/tests/expected/mainTest.c
./hg/autoSql/tests/expected/doc.h
./hg/autoSql/tests/expected/simpleTest.h
./hg/autoSql/tests/expected/doc.c
./hg/autoSql/tests/expected/doc2.h
./hg/autoSql/tests/expected/symTest.h
./hg/autoSql/tests/expected/hardTest.h
./hg/autoSql/tests/expected/simpleTest.c
./hg/autoSql/tests/expected/hardTest.c
./hg/autoSql/tests/expected/doc2.c
./hg/autoSql/tests/expected/polyTest.h
./hg/autoSql/tests/expected/polyTest.c
./hg/autoSql/tests/expected/symTest.c
./hg/autoSql/autoSql.c
./hg/autoSql/eztok.h
./hg/genoPheno/gpShuffleData/gpShuffleData.c
./hg/genoPheno/gpFakeData/gpFakeData.c
./hg/pslFilterPrimers/pslFilterPrimers.c
./hg/sage/addAveMedScoreToPsls.c
./hg/sage/createSageSummary.c
./hg/pslSplit/pslSplit.c
./hg/cgiExample/cgiExample.c
./hg/hgCoordConv/hgCoordConv.c
./hg/pslDist/pslDist.c
./hg/checkCoverageGaps/checkCoverageGaps.c
./hg/pslSplitOnTarget/pslSplitOnTarget.c
./hg/fqToQac/fqToQac.c
./hg/checkHgFindSpec/checkHgFindSpec.c
./hg/hgCert/hgCert.c
./hg/featureBits/featureBits.c
./hg/wikiPlot/wikiPlot.c
./hg/gigAssembler/g2gSeqOverlap/g2gSeqOverlap.c
./hg/gigAssembler/checkPsl/checkPsl.c
./hg/gigAssembler/ooChains/ooChains.c
./hg/gigAssembler/ooLiftSpec/ooLiftSpec.c
./hg/gigAssembler/checkGoldDupes/checkGoldDupes.c
./hg/gigAssembler/checkNt/checkNt.c
./hg/gigAssembler/checkAgpAndFa/checkAgpAndFa.c
./hg/gigAssembler/ooCloneSizes/ooCloneSizes.c
./hg/gigAssembler/makePai/makePai.c
./hg/gigAssembler/ooGreedy/bak/ooGreedy.c
./hg/gigAssembler/ooGreedy/bak/ooGreedy.39.c
./hg/gigAssembler/ooGreedy/getgene/getgene.c
./hg/gigAssembler/ooGreedy/protDust/protDust.c
./hg/gigAssembler/ooGreedy/ooGreedy.c
./hg/gigAssembler/ooGreedy/primeMate/primeMate.c
./hg/gigAssembler/ooGreedy/ooGreedy.h
./hg/gigAssembler/ooGreedy/scanIntrons/scanIntrons.c
./hg/gigAssembler/ooSplitFins/ooSplitFins.c
./hg/gigAssembler/ooCloneOverlaps/ooCloneOverlaps.c
./hg/gigAssembler/codJobs/jabba/jabba.c
./hg/gigAssembler/codJobs/jabba/jobDb.c
./hg/gigAssembler/codJobs/jabba/jobDb.h
./hg/gigAssembler/cmpMap/cmpMap.c
./hg/gigAssembler/ooCloneSpan/ooCloneSpan.c
./hg/gigAssembler/ooCloneInfo/ooCloneInfo.c
./hg/gigAssembler/checkYbr/checkYbr.c
./hg/gigAssembler/pairedReads/ppWashU/ppWashU.c
./hg/gigAssembler/pairedReads/ppAnalyse/ppAnalyse.c
./hg/gigAssembler/pairedReads/ppWhitehead/ppWhitehead.c
./hg/gigAssembler/pairedReads/ppStats/pPair.h
./hg/gigAssembler/pairedReads/ppStats/ppStats.c
./hg/gigAssembler/pairedReads/ppStats/pPair.c
./hg/gigAssembler/pairedReads/ppSanger/sangInsert.h
./hg/gigAssembler/pairedReads/ppSanger/sangRead.c
./hg/gigAssembler/pairedReads/ppSanger/ppSanger.c
./hg/gigAssembler/pairedReads/ppSanger/sangRange.h
./hg/gigAssembler/pairedReads/ppSanger/sangRead.h
./hg/gigAssembler/pairedReads/ppSanger/sangInsert.c
./hg/gigAssembler/pairedReads/ppSanger/sangRange.c
./hg/gigAssembler/g2gOverlap/g2gOverlap.c
./hg/gigAssembler/barger/barger.c
./hg/gigAssembler/ooWeedZero/ooWeedZero.c
./hg/gigAssembler/cmParse/imreClone.h
./hg/gigAssembler/cmParse/imreClone.c
./hg/gigAssembler/cmParse/cmParse.c
./hg/gigAssembler/ooCloneEnds/ooCloneEnds.c
./hg/gigAssembler/mm/ooMapMend/ooMapMend.c
./hg/gigAssembler/mm/mmTestSet/mmTestSet.c
./hg/gigAssembler/mm/checkEnds/checkEnds.c
./hg/gigAssembler/mm/mm/mm.c
./hg/gigAssembler/mendMap/mendMap.c
./hg/gigAssembler/checkOut/checkOut.c
./hg/gigAssembler/ntGoldGl/ntGoldGl.c
./hg/gigAssembler/checkDbSync/checkDbSync.c
./hg/gigAssembler/gapper/gapper.c
./hg/gigAssembler/checkQa/checkQa.c
./hg/gigAssembler/checkN/checkN.c
./hg/gigAssembler/ooNtInput/ooNtInput.c
./hg/gigAssembler/qaGold/qaGold.c
./hg/gigAssembler/ooTester/ooTester.c
./hg/gigAssembler/goldToAgp/goldToAgp.c
./hg/gigAssembler/conJobs/cdnaOnOoJobs/cdnaOnOoJobs.c
./hg/gigAssembler/conJobs/rmskOoJobs/rmskOoJobs.c
./hg/gigAssembler/conJobs/patJobs/opatJobs.c
./hg/gigAssembler/conJobs/patJobs/patJobs.c
./hg/gigAssembler/conJobs/pslGenoJobs/test.c
./hg/gigAssembler/conJobs/pslGenoJobs/makeFix.c
./hg/gigAssembler/conJobs/pslGenoJobs/pslGenoJobs.c
./hg/gigAssembler/conJobs/repMaskJobs/repMaskJobs.c
./hg/gigAssembler/conJobs/pslOoJobs/pslOoJobs.c
./hg/gigAssembler/conJobs/pslSelfJobs/pslSelfJobs.c
./hg/gigAssembler/psLayout/psLayout.c
./hg/gigAssembler/psLayout/cruft/chkSym.c
./hg/gigAssembler/psLayout/cruft/psLayHit.c
./hg/maskOutFa/maskOutFa.c
./hg/cartDump/cartDump.c
./hg/pslAnal/pslAnal.c
./hg/pslSort/pslSort.c
./hg/recycleDb/bedDown/bedDown.c
./hg/recycleDb/bedUp/bedUp.c
./hg/genePredSingleCover/geneScore.c
./hg/genePredSingleCover/geneScore.h
./hg/genePredSingleCover/genePredSingleCover.c
./hg/agpSangerUnfinished/agpSangerUnfinished.c
./hg/liftAcross/liftAcross.c
./hg/sageVisCGI/gnuPlot2D.c
./hg/sageVisCGI/gnuPlot2D.h
./hg/sageVisCGI/gnuplot_i.h
./hg/sageVisCGI/rosChr22Dat.h
./hg/sageVisCGI/rosChr22Dat.c
./hg/sageVisCGI/gnuplot_i.c
./hg/sageVisCGI/sageVisCGI.c
./hg/mrnaToGene/mrnaToGene.c
./hg/txCds/txCdsEvFromBed/txCdsEvFromBed.c
./hg/txCds/txCdsPredict/txCdsPredict.c
./hg/txCds/txCdsRedoUniprotPicks/txCdsRedoUniprotPicks.c
./hg/txCds/txCdsOrtho/txCdsOrtho.c
./hg/txCds/txCdsToGene/txCdsToGene.c
./hg/txCds/txCdsEvFromBorf/txCdsEvFromBorf.c
./hg/txCds/txCdsSvmInput/txCdsSvmInput.c
./hg/txCds/txCdsRepick/txCdsRepick.c
./hg/txCds/txCdsEvFromRna/txCdsEvFromRna.c
./hg/txCds/txCdsRaExceptions/txCdsRaExceptions.c
./hg/txCds/txCdsEvFromProtein/txCdsEvFromProtein.c
./hg/txCds/txCdsRefBestEvOnly/txCdsRefBestEvOnly.c
./hg/txCds/txCdsBadBed/txCdsBadBed.c
./hg/txCds/txCdsGoodBed/txCdsGoodBed.c
./hg/txCds/txCdsCluster/txCdsCluster.c
./hg/txCds/txCdsOrfInfo/txCdsOrfInfo.c
./hg/txCds/txCdsPick/txCdsPick.c
./hg/txCds/txCdsWeed/txCdsWeed.c
./hg/txCds/txInfoAssemble/txInfoAssemble.c
./hg/txCds/txCdsSuspect/txCdsSuspect.c
./hg/getRna/getRna.c
./hg/hgc/mgcClick.c
./hg/hgc/retroClick.c
./hg/hgc/t2g.c
./hg/hgc/parClick.h
./hg/hgc/wikiTrack.c
./hg/hgc/gencodeClick.c
./hg/hgc/virusClick.c
./hg/hgc/lowelab.c
./hg/hgc/hgdpClick.c
./hg/hgc/peakClusters.c
./hg/hgc/transMapClick.c
./hg/hgc/bamClick.c
./hg/hgc/variomeClick.c
./hg/hgc/retroClick.h
./hg/hgc/encodeClick.c
./hg/hgc/ccdsClick.c
./hg/hgc/bigBedClick.c
./hg/hgc/gencodeClick.h
./hg/hgc/hgc.c
./hg/hgc/makeItemsClick.c
./hg/hgc/transMapClick.h
./hg/hgc/dbRIP.c
./hg/hgc/expClick.c
./hg/hgc/regMotif.c
./hg/hgc/rnaFoldClick.c
./hg/hgc/txCdsInfo.c
./hg/hgc/mgcClick.h
./hg/hgc/wiggleClick.c
./hg/hgc/hgc.h
./hg/hgc/virusClick.h
./hg/hgc/mafClick.c
./hg/hgc/parClick.c
./hg/hgc/cgapSageClick.c
./hg/hgc/ccdsClick.h
./hg/hgc/vcfClick.c
./hg/hgc/gvfClick.c
./hg/qacAddGapIdx/qacAddGapIdx.c
./hg/getRnaPred/getRnaPred.c
./hg/hgTables/asFilter.c
./hg/hgTables/correlate.h
./hg/hgTables/great.c
./hg/hgTables/maf.c
./hg/hgTables/rangeHistogram.c
./hg/hgTables/wikiTrack.c
./hg/hgTables/userRegions.c
./hg/hgTables/filterFields.c
./hg/hgTables/wiggle.c
./hg/hgTables/hgTables.h
./hg/hgTables/asFilter.h
./hg/hgTables/bam.c
./hg/hgTables/intersect.c
./hg/hgTables/schema.c
./hg/hgTables/mainPage.c
./hg/hgTables/bedList.c
./hg/hgTables/hgTables.c
./hg/hgTables/bigWig.c
./hg/hgTables/galaxy.c
./hg/hgTables/correlatePlot.c
./hg/hgTables/vcf.c
./hg/hgTables/joining.c
./hg/hgTables/asObj.c
./hg/hgTables/custom.c
./hg/hgTables/seqOut.c
./hg/hgTables/usage.c
./hg/hgTables/compositeTrack.c
./hg/hgTables/gffOut.c
./hg/hgTables/pal.c
./hg/hgTables/sumStats.c
./hg/hgTables/microarrayTables.c
./hg/hgTables/chromGraph.c
./hg/hgTables/correlate.c
./hg/hgTables/bigBed.c
./hg/hgTables/identifiers.c
./hg/snp/fixedDiffs/fixedDiffs.c
./hg/snp/findSnpClusters/findSnpClusters.c
./hg/snp/snpMask/snpMaskFlank.c
./hg/snp/snpMask/snpMask.c
./hg/snp/snpMask/seqWithoutDeletions.c
./hg/snp/snpMask/snpMaskAddInsertions.c
./hg/snp/snpMask/snpMaskSingle.c
./hg/snp/snpMask/seqWithInsertions.c
./hg/snp/snpMask/snpMaskFlankSubset.c
./hg/snp/snpMask/snpMaskGenes.c
./hg/snp/snpMask/snpMapToExon.c
./hg/snp/snpMask/snpMaskChrom.c
./hg/snp/snpMask/snpMaskCutDeletions.c
./hg/snp/details/dbSnp.c
./hg/snp/snpValid/snpValid.c
./hg/snp/snpValid/snpValidOld.c
./hg/snp/tajD/tajD.c
./hg/snp/pbToAlleleCounts/pbToAlleleCounts.c
./hg/snp/snpLoad/illuminaLookup.c
./hg/snp/snpLoad/snpSort.c
./hg/snp/snpLoad/snpGetSimple.c
./hg/snp/snpLoad/snpExpandAllele.c
./hg/snp/snpLoad/snpContigLocusIdCondense.c
./hg/snp/snpLoad/snpCleanSeq.c
./hg/snp/snpLoad/snpContigLocusIdFilter.c
./hg/snp/snpLoad/snpCompareWeight.c
./hg/snp/snpLoad/snpReadFasta.c
./hg/snp/snpLoad/snpClassAndObserved.c
./hg/snp/snpLoad/cnpLookup.c
./hg/snp/snpLoad/snpGetSeqDup.c
./hg/snp/snpLoad/snpMissing.c
./hg/snp/snpLoad/snpReadSeq2.c
./hg/snp/snpLoad/snpCompare.c
./hg/snp/snpLoad/snpOrtho.c
./hg/snp/snpLoad/snpCheckClassAndObserved.c
./hg/snp/snpLoad/hapmapLookup.c
./hg/snp/snpLoad/snpExceptionCheck.c
./hg/snp/snpLoad/subSnpCondense.c
./hg/snp/snpLoad/snpCompareLoctype.c
./hg/snp/snpLoad/snpLocType125.c
./hg/snp/snpLoad/snpOrthoLookup.c
./hg/snp/snpLoad/affyCheck.c
./hg/snp/snpLoad/snpSplitByChrom2.c
./hg/snp/snpLoad/snpCheckCluster2.c
./hg/snp/snpLoad/hapmap1.c
./hg/snp/snpLoad/snpCheckCluster.c
./hg/snp/snpLoad/snpFreq.c
./hg/snp/snpLoad/snpFunction.c
./hg/snp/snpLoad/hapmapValidate.c
./hg/snp/snpLoad/fetchSeq.c
./hg/snp/snpLoad/trimHeader.c
./hg/snp/snpLoad/hapmapMixed.c
./hg/snp/snpLoad/snpSplitSimple.c
./hg/snp/snpLoad/snpSNP.c
./hg/snp/snpLoad/snpLoadFromTmp.c
./hg/snp/snpLoad/snpCheckAlleles.c
./hg/snp/snpLoad/snpContigLocFilter125.c
./hg/snp/snpLoad/illuminaLookup1M.c
./hg/snp/snpLoad/snpSplitByChrom.c
./hg/snp/snpLoad/snpPAR.c
./hg/snp/snpLoad/snpOrthoJoin.c
./hg/snp/snpLoad/snpCheckLocTypeSize.c
./hg/snp/snpLoad/snpSplit.c
./hg/snp/snpLoad/hapmapSummary.c
./hg/snp/snpLoad/snpLoad.c
./hg/snp/snpLoad/snpNcbiToUcsc.c
./hg/snp/snpLoad/snpLocType.c
./hg/snp/snpLoad/snpContigLocusIdFilter125.c
./hg/snp/snpLoad/snpMultiple.c
./hg/snp/snpLoad/snpMoltype.c
./hg/snp/snpLoad/snpRefUCSC.c
./hg/snp/snpLoad/affyLookup.c
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./hg/snp/snpLoad/hapmap2.c
./hg/snp/snpLoad/hapmapPhaseIIISummary.c
./hg/snp/snpLoad/snpFinalTable.c
./hg/snp/snpLoad/snpGetInsertions.c
./hg/snp/snpLoad/snpExceptions.c
./hg/snp/snpLoad/snpLoadFasta.c
./hg/snp/snpLoad/illuminaLookup2.c
./hg/snp/snpLoad/snpReadSeq.c
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./hg/snp/snpLoad/hapmapOrtho.c
./hg/snp/snpLoad/snpGetDeletions.c
./hg/snp/snpLoad/snpOrthoStats.c
./hg/hgGene/dnaBindMotif.c
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./hg/qaPushQ/qaPushQ.c
./hg/qacAgpLift/qacAgpLift.c
./hg/qaToQac/qaToQac.c
./hg/pslToBed/pslToBed.c
./hg/agpTweak/agpTweak.c
./hg/encode/metaCollect/metaCollect.c
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./hg/encode/encodeMergeReplicates/encodeMergeReplicates.c
./hg/encode/hgEncodeVocab/hgEncodeVocab.c
./hg/encode/encodeMergeReplicatesBatch/encodeMergeReplicatesBatch.c
./hg/encode/encodePatchTdb/encodePatchTdb.c
./hg/encode/inc/encodePatchTdb.h
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./hg/encode/encodeRenameObj/encodeRenameObj.c
./hg/encode/validateFiles/validateFiles.c
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./hg/ccTrack/bedToBinDex/bedToBinDex.c
./hg/embossToPsl/embossToPsl.c
./hg/snpException/snpException.c
./hg/hgLiftOver/hgLiftOver.c
./hg/bedThickOnly/bedThickOnly.c
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./hg/ctgFaToFa/ctgFaToFa.c
./hg/getallpep/getallpep.c
./hg/intronEnds/intronEnds.c
./hg/lib/kgXref.c
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./hg/lib/recombRateMouse.c
./hg/lib/vegaInfo.c
./hg/lib/tigrCmrGene.c
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./hg/lib/plasEndPairs.c
./hg/lib/mcnBreakpoints.c
./hg/lib/wiggle.c
./hg/lib/transRegCode.c
./hg/lib/cddInfo.c
./hg/lib/affyAllExonProbe.c
./hg/lib/gcPercent.c
./hg/lib/alleleFreqs.c
./hg/lib/tfbsConsFactors.c
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./hg/lib/dnaMarkovSql.c
./hg/lib/gbMiscDiff.c
./hg/lib/samAlignment.c
./hg/lib/omicia.c
./hg/lib/gencodeIntron.c
./hg/lib/bed5Pval.c
./hg/lib/taxonDivision.c
./hg/lib/goaPart.c
./hg/lib/megablastInfo.c
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./hg/lib/wiggleCart.c
./hg/lib/lowelabTIGROperonScore.c
./hg/lib/pslReader.c
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./hg/lib/omimTitle.c
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./hg/lib/humanParalog.c
./hg/lib/mysqlTableStatus.c
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./hg/lib/lowelabPfamHit.c
./hg/lib/hgFindSpecCustom.c
./hg/lib/affy120KDetails.c
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./hg/lib/encode/encodePeak.c
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./hg/lib/encode/wgEncodeGencodeGeneSource.c
./hg/lib/encode/tagAlign.c
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./hg/lib/encode/wgEncodeGencodeTag.c
./hg/lib/encode/wgEncodeGencodeTranscriptSupport.c
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./hg/lib/encode/peptideMapping.c
./hg/lib/encode/wgEncodeGencodeExonSupport.c
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./hg/lib/encode/encodeIndels.c
./hg/lib/encode/wgEncodeGencodeUniProt.c
./hg/lib/encode/wgEncodeGencodePubMed.c
./hg/lib/encode/encodeStanfordPromotersAverage.c
./hg/lib/chainNet.c
./hg/lib/isochores.c
./hg/lib/botDelay.c
./hg/lib/rhMapInfo.c
./hg/lib/imageClone.c
./hg/lib/sargassoSeaXra.c
./hg/lib/bed5FloatScore.c
./hg/lib/stsMapMouseNew.c
./hg/lib/cgapSage/cgapSage.c
./hg/lib/cgapSage/cgapSageLib.c
./hg/lib/genotypeFreqs.c
./hg/lib/retroMrnaInfo.c
./hg/lib/snp125.c
./hg/lib/sageCounts.c
./hg/lib/est3.c
./hg/lib/geneSimilarities.c
./hg/lib/dless.c
./hg/lib/genMapDb.c
./hg/lib/geneCheckDetails.c
./hg/lib/softPromoter.c
./hg/lib/ensPhusionBlast.c
./hg/lib/genomeRangeTreeFile.c
./hg/lib/txCluster.c
./hg/lib/refSeqStatus.c
./hg/lib/lsSnpPdb.c
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./hg/lib/chicken13kInfo.c
./hg/lib/ispyTables.c
./hg/lib/chromGraphFactory.c
./hg/lib/protVar.c
./hg/lib/hapmapAllelesSummary.c
./hg/lib/jgiGene.c
./hg/lib/dvXref2.c
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./hg/lib/ccdsNotes.c
./hg/lib/wabAli.c
./hg/lib/tableStatus.c
./hg/lib/ggCluster.c
./hg/lib/rnaFold.c
./hg/lib/kg1ToKg2.c
./hg/lib/dnaMotifSql.c
./hg/lib/estPair.c
./hg/lib/codeBlastScore.c
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./hg/lib/genomicDups.c
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./hg/lib/expRecord.c
./hg/lib/ggMrnaAli.c
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./hg/lib/scoredRef.c
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./hg/lib/contigAcc.c
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./hg/lib/tilingPath.c
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./hg/lib/jaxQTL3.c
./hg/lib/codeBlast.c
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./hg/lib/jaxQTL.c
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./hg/lib/sangerGeneToWBGeneID.c
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./hg/lib/tfbsCons.c
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./hg/lib/hapmapSnps.c
./hg/lib/googleAnalytics.c
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./hg/lib/chr18deletions.c
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./hg/lib/ggDump.c
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./hg/lib/tests/binTest.c
./hg/lib/wigAsciiToBinary.c
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./hg/lib/celeraDupPositive.c
./hg/lib/coordConv.c
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./hg/lib/snp125Exceptions.c
./hg/lib/ooUtils.c
./hg/lib/chromInserts.c
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./hg/lib/validateGisaid.c
./hg/lib/gvUi.c
./hg/lib/hapmapPhaseIIISummary.c
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./hg/lib/jalview.c
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./hg/lib/ncRna.c
./hg/lib/hCytoBand.c
./hg/lib/cnpIafrate2.c
./hg/lib/minChromSize.c
./hg/lib/trackHub.c
./hg/lib/transRegCodeCondition.c
./hg/lib/loweutils.c
./hg/lib/syntenyBerk.c
./hg/lib/chainCart.c
./hg/lib/pal.c
./hg/lib/cnpSebat2.c
./hg/lib/kgProtAlias.c
./hg/lib/txEdgeOrtho.c
./hg/lib/syntenySanger.c
./hg/lib/zdobnovSynt.c
./hg/lib/snp125CodingCoordless.c
./hg/lib/chromKeeper.c
./hg/lib/knownToSuper.c
./hg/lib/trackDbCustom.c
./hg/lib/rmskOut.c
./hg/lib/affyGenoDetails.c
./hg/lib/itemConf.c
./hg/lib/rnaGenes.c
./hg/lib/sage.c
./hg/lib/snpExceptions.c
./hg/lib/mapSts.c
./hg/lib/spDb.c
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./hg/lib/pscreen.c
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./hg/lib/polyGenotype.c
./hg/lib/pslWScore.c
./hg/lib/pcrResult.c
./hg/lib/hapmapSnpsCombined.c
./hg/lib/hgGene.c
./hg/lib/visiGene.c
./hg/lib/genotype.c
./hg/lib/cdsPick.c
./hg/lib/mafGene.c
./hg/lib/recombRate.c
./hg/lib/cartDb.c
./hg/lib/chromGraph.c
./hg/lib/dbSnpRs.c
./hg/lib/taxonXref.c
./hg/lib/ensInfo.c
./hg/lib/bioImage.c
./hg/lib/roughAli.c
./hg/lib/cpgIslandExt.c
./hg/lib/txGraph.c
./hg/lib/knownInfo.c
./hg/lib/clonePos.c
./hg/lib/bacCloneAlias.c
./hg/lib/snoRNAs.h
./hg/lib/traceInfo.c
./hg/lib/customTrack.c
./hg/lib/hubConnect.c
./hg/lib/refLink.c
./hg/lib/vntr.c
./hg/lib/hapmapAlleleFreq.c
./hg/lib/affyOffset.c
./hg/lib/netCart.c
./hg/txGraph/txgAnalyze/txgAnalyze.c
./hg/txGraph/txgGoodEdges/txgGoodEdges.c
./hg/txGraph/txPslFilter/txPslFilter.c
./hg/txGraph/txgAddEvidence/txgAddEvidence.c
./hg/txGraph/txBedToGraph/makeGraph.c
./hg/txGraph/txBedToGraph/txBedToGraph.c
./hg/txGraph/txBedToGraph/txBedToGraph.h
./hg/txGraph/txgTrim/txgTrim.c
./hg/txGraph/txOrtho/txOrtho.c
./hg/txGraph/txWalk/txWalk.c
./hg/txGraph/txReadRa/txReadRa.c
./hg/txGraph/txgToAgx/txgToAgx.c
./hg/txGraph/txgToXml/txgToXml.c
./hg/txGraph/agxToTxg/agxToTxg.c
./hg/txGraph/bedToTxEdges/bedToTxEdges.c
./hg/txGraph/txPslToBed/txPslToBed.c
./hg/txGraph/txAbFragFind/txAbFragFind.c
./hg/hgsqldumpLocal/hgsqldumpLocal.c
./hg/gsBig/gsBig.c
./hg/pslReps/pslReps.c
./hg/gpToGtf/gpToGtf.c
./hg/hgChroms/hgChroms.c
./hg/hgSpeciesRna/hgSpeciesRna.c
./hg/hgBlatTest/hgBlatTest.c
./hg/bedToGenePred/bedToGenePred.c
./hg/pslQuickFilter/pslQuickFilter.c
./hg/hgBlat/hgBlat.c
./hg/pslCat/pslCat.c
./hg/secure/secure.c
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./hg/pslOneTwo/chainOneTwo.c
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./hg/hgsql/hgsql.c
./hg/bedSort/bedSort.c
./hg/sqlToXml/sqlToXml.c
./hg/hgConvert/hgConvert.c
./hg/hgGeneBands/hgGeneBands.c
./hg/pslToFa/pslToFa.c
./hg/reviewSanity/reviewSanity.c
./hg/poster/foldGfx/foldGfx.c
./hg/poster/finPoster/finPoster.c
./hg/poster/foldDb/foldDb.c
./hg/poster/foldDb/checkDupe/checkDupe.c
./hg/hgFileSearch/hgFileSearch.c
./hg/tutorial/affyVsIlluminaCommon/affyVsIlluminaCommon.c
./hg/tutorial/cgiTaxon/cgiTaxon.c
./hg/tutorial/cgiPicture/cgiPicture.c
./hg/tutorial/cgiAlign/cgiAlign.c
./hg/tutorial/bigGene/bigGene.c
./hg/hgsqlimport/hgsqlimport.c
./hg/estOrient/estOrient.c
./hg/near/hgNear/flyBase.c
./hg/near/hgNear/colTemplate.c
./hg/near/hgNear/association.c
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./hg/near/hgNear/intronSize.c
./hg/near/hgNear/configure.c
./hg/near/hgNear/examples.c
./hg/near/hgNear/expRatio.c
./hg/near/hgNear/go.c
./hg/near/hgNear/userSettings.c
./hg/near/hgNear/advFilter.c
./hg/near/hgNear/pfam.c
./hg/near/hgNear/afiAli.c
./hg/near/hgNear/order.c
./hg/near/hgNear/knownGene.c
./hg/near/hgNear/hgNear.h
./hg/near/hgNear/getSeq.c
./hg/near/hgExpDistance/hgExpDistance_fm_tm.c
./hg/near/hgExpDistance/diffDistTables.c
./hg/near/hgExpDistance/hgExpDistance_fq.c
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./hg/near/hgKnownToSuper/hgKnownToSuper.c
./hg/near/hgNetDist/hprdP2p.c
./hg/near/hgNetDist/hgLoadNetDist.c
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./hg/near/knownToHprd/knownToHprd.c
./hg/near/hgProtIdToGenePred/hgProtIdToGenePred.c
./hg/near/hgEmblProtLinks/hgEmblProtLinks.c
./hg/near/hgMapViaSwissProt/hgMapViaSwissProt.c
./hg/near/hgMapToGene/hgMapToGene.c
./hg/near/hgGoAssociation/hgGoAssociation.c
./hg/near/hgCeOrfToGene/hgCeOrfToGene.c
./hg/near/hgClusterGenes/hgClusterGenes.c
./hg/near/hprdXmlToTab/hprd.h
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./hg/near/hgNearTest/hgNearTest.c
./hg/near/hgZfishEnsXRef/hgEnsGeneXRef.c
./hg/near/hgWormLinks/hgWormLinks.c
./hg/near/pepPredToFa/pepPredToFa.c
./hg/regulate/regClusterBedExpCfg/regClusterBedExpCfg.c
./hg/regulate/companion/regCompanionCorrelateEnhancerAndExpression/regCompanionCorrelateEnhancerAndExpression.c
./hg/regulate/companion/regCompanionEntropy/regCompanionEntropy.c
./hg/regulate/companion/regCompanionGraphVsFixedPoints/regCompanionGraphVsFixedPoints.c
./hg/regulate/companion/regCompanionChia/regCompanionChia.c
./hg/regulate/companion/regCompanionCalcBedGraphNorm/regCompanionCalcBedGraphNorm.c
./hg/regulate/companion/regCompanionCtcfInterference/regCompanionCtcfInterference.c
./hg/regulate/companion/regCompanionSquishGraph/regCompanionSquishGraph.c
./hg/regulate/companion/regCompanionEnhProCellSpecificPairs/regCompanionEnhProCellSpecificPairs.c
./hg/regulate/companion/regCompanion5C/regCompanion5C.c
./hg/regulate/companion/regCompanionTopPeaks/regCompanionTopPeaks.c
./hg/regulate/companion/regCompanionHistoneBox/regCompanionHistoneBox.c
./hg/regulate/companion/regCompanionPickEnhancers/regCompanionPickEnhancers.c
./hg/regulate/regChromiaMergeWindows/regChromiaMergeWindows.c
./hg/regulate/regCluster/regCluster.c
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./hg/regulate/regBeadPos/bak/06/regBeadPos.c
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./hg/regulate/regStartSampleEmbl/regStartSampleEmbl.c
./hg/regulate/regClusterMakeTableOfTables/regClusterMakeTableOfTables.c
./hg/regulate/regBedStats/regBedStats.c
./hg/regulate/regClusterAttachMetadataToTableOfTables/regClusterAttachMetadataToTableOfTables.c
./hg/fishClones/fishClones.c
./hg/pslPairs/pslPairs.c
./hg/hgPcr/hgPcr.c
./hg/qacToWig/qacToWig.c
./hg/txPaper/txPaperPfam/txPaperPfam.c
./hg/txPaper/txGeneBakeOff/refCluster.h
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./hg/txPaper/txGeneBakeOff/txGeneBakeOff.c
./hg/txPaper/txPaperScop/txPaperScop.c
./hg/geneOverlap/geneOverlap.c
./hg/geneBounds/axtForEst/axtForEst.c
./hg/geneBounds/orf/orf.c
./hg/geneBounds/expToRna/expToRna.c
./hg/geneBounds/orfStats/orfStats.c
./hg/geneBounds/checkableBorf/checkableBorf.c
./hg/geneBounds/bedThickToCds/bedThickToCds.c
./hg/geneBounds/twinOrfStats2/twinOrfStats2.c
./hg/geneBounds/estLibStats/estLibStats.c
./hg/geneBounds/dnaMotifFind/dnaMotifFind.c
./hg/geneBounds/emblMatrixToMotif/emblMatrixToMotif.c
./hg/geneBounds/twinOrfStats3/twinOrfStats3.c
./hg/geneBounds/eisenInput/eisenInput.c
./hg/geneBounds/lib/improbRunInfo.c
./hg/geneBounds/motifLogo/motifLogo.c
./hg/geneBounds/iriToControlTable/iriToControlTable.c
./hg/geneBounds/twinOrf2/twinOrf2.c
./hg/geneBounds/iriToDnaMotif/iriToDnaMotif.c
./hg/geneBounds/raToCds/raToCds.c
./hg/geneBounds/clusterRna/clusterRna.c
./hg/geneBounds/inc/improbRunInfo.h
./hg/geneBounds/twinOrfStats/twinOrfStats.c
./hg/geneBounds/orfEnum/orfEnum.c
./hg/geneBounds/clusterPsl/clusterPsl.c
./hg/geneBounds/twinOrf/twinOrf.c
./hg/geneBounds/bedCons/bedCons.c
./hg/geneBounds/assessLibs/assessLibs.c
./hg/geneBounds/motifSig/motifSig.c
./hg/geneBounds/orfCompare/orfCompare.c
./hg/geneBounds/liftPromoHits/liftPromoHits.c
./hg/geneBounds/averagExp/averagExp.c
./hg/geneBounds/twinOrf3/twinOrf3.c
./hg/geneBounds/promoSeqFromCluster/promoSeqFromCluster.c
./hg/geneBounds/clusterGenes/clusterGenes.c
./hg/geneBounds/polyInfo/polyInfo.c
./hg/synMap/createSlamParaSpec.c
./hg/synMap/createBinMap.c
./hg/synMap/runSlam.c
./hg/synMap/prep_lc_rm_for_slam.c
./hg/synMap/synMapTest.c
./hg/dnaGene/dnaGene.c
./hg/gpcrParser/gpcrParser.c
./hg/randomPlacement/randomPlacement.c
./hg/hgGateway/hgGateway.c
./hg/hgKnownGeneList/hgKnownGeneList.c
./hg/oneShot/wgEncodeRegGenRa/wgEncodeRegGenRa.c
./hg/oneShot/tdbRewriteReduceReplaces/tdbRewriteReduceReplaces.c
./hg/oneShot/patchToAgp/patchToAgp.c
./hg/oneShot/tdbRewriteAddReplaces/tdbRewriteAddReplaces.c
./hg/oneShot/rangeGraph/rgi.h
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./hg/oneShot/spanRaft/spanRaft.c
./hg/oneShot/protDat/protDat.c
./hg/oneShot/dupedInTable/dupedInTable.c
./hg/oneShot/weedTab/weedTab.c
./hg/oneShot/doRgdGene2/doRgdGene2.c
./hg/oneShot/fakeSeqDiffs/fakeSeqDiffs.c
./hg/oneShot/tdbRewriteSubtrackToParent/tdbRewriteSubtrackToParent.c
./hg/oneShot/tempLower/tempLower.c
./hg/oneShot/rmDupCol1/rmDupCol1.c
./hg/oneShot/bedFirstCodingExonSize/bedFirstCodingExonSize.c
./hg/oneShot/fixEnsGtf/fixEnsGtf.c
./hg/oneShot/jingTestFoo/jingTestFoo.c
./hg/oneShot/cacheMergedRanges/rbmTree.h
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./hg/oneShot/cacheMergedRanges/cacheMergedRanges.c
./hg/oneShot/roundNewViewLimitsInRa/roundNewViewLimitsInRa.c
./hg/oneShot/bridgeDif/bridgeDif.c
./hg/oneShot/faTest/faTest.c
./hg/oneShot/testXap/testXap.c
./hg/oneShot/randomEst/randomEst.c
./hg/oneShot/clonePos/clonePos.c
./hg/oneShot/doOmimLocation/doOmimLocation.c
./hg/oneShot/testIndex/testIndex.c
./hg/oneShot/makeTrackDbTypeTags/makeTrackDbTypeTags.c
./hg/oneShot/tetFilter/tetFilter.c
./hg/oneShot/agpNotInf/agpNotInf.c
./hg/oneShot/kgName/sgName.c
./hg/oneShot/kgName/fbName.c
./hg/oneShot/kgName/kgName.c
./hg/oneShot/fakeLinkage/fakeLinkage.c
./hg/oneShot/tryNewColorOverlay/tryNewColorOverlay.c
./hg/oneShot/codAbsAffyQuery/codAbsAffyQuery.c
./hg/oneShot/getHumanBrainRna/getHumanBrainRna.c
./hg/oneShot/doEvoFoldV2/doEvoFoldV2.c
./hg/oneShot/somePsls/somePsls.c
./hg/oneShot/agpAddCtgNamesAndGaps/agpAddCtgNamesAndGaps.c
./hg/oneShot/evalEnds/evalEnds.c
./hg/oneShot/agpVsMap/agpVsMap.c
./hg/oneShot/fakeHomozygousity/fakeHomozygousity.c
./hg/oneShot/seqFromPsl/seqFromPsl.c
./hg/oneShot/musAliAt/musAliAt.c
./hg/oneShot/fixBlastTrack/fixBlastTrack.c
./hg/oneShot/testBb/testBb.c
./hg/oneShot/blatFilter/blatFilter.c
./hg/oneShot/pslCut/pslCut.c
./hg/oneShot/bed15To3Col/bed15To3Col.c
./hg/oneShot/timeGifPng/timeGifPng.c
./hg/oneShot/tempLift/tempLift.c
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./hg/oneShot/addTopoToPrimers/addTopoToPrimers.c
./hg/oneShot/trimFosmids/trimFosmids.c
./hg/oneShot/labSheet/labSheet.c
./hg/oneShot/doRgdGene2Xref/doRgdGene2Xref.c
./hg/oneShot/getRgdGeneCds/getRgdGeneCds.c
./hg/oneShot/cmpOverlaps/cmpOverlaps.c
./hg/oneShot/bwTestRead/bwTestRead.c
./hg/oneShot/findToFixBedGraphViewLimits/findToFixBedGraphViewLimits.c
./hg/oneShot/tdbRewriteViewsToSubtracks1/tdbRewriteViewsToSubtracks1.c
./hg/oneShot/missingTable/missingTable.c
./hg/oneShot/mhcToNt/mhcToNt.c
./hg/oneShot/chromToPos/chromToPos.c
./hg/oneShot/doRgdGene2UniProt/doRgdGene2UniProt.c
./hg/oneShot/cartSimNoInsert/cartSimNoInsert.c
./hg/oneShot/tdbRewriteSortTags/tdbRewriteSortTags.c
./hg/oneShot/mapToSts/mapToSts.c
./hg/oneShot/sangPairs/sangPairs.c
./hg/oneShot/tdbRewriteRemoveUnused/tdbRewriteRemoveUnused.c
./hg/oneShot/doEvoFold/doEvoFold.c
./hg/oneShot/doOmimDisorders/doOmimDisorders.c
./hg/oneShot/makeOrthoAtgTable/makeOrthoAtgTable.c
./hg/oneShot/rmFromFinf/rmFromFinf.c
./hg/oneShot/cartSim/cartSim.c
./hg/oneShot/cJoinX/cJoinX.c
./hg/oneShot/wgEncodeRegTfbsDedupeHelp/wgEncodeRegTfbsDedupeHelp.c
./hg/oneShot/evalEndOverlaps/evalEndOverlaps.c
./hg/oneShot/evalEndOverlaps/ocp.c
./hg/oneShot/evalEndOverlaps/ocp.h
./hg/oneShot/doOmimGene2/doOmimGene2.c
./hg/oneShot/doOmimAv/doOmimAv.c
./hg/oneShot/weedKnownBlastTab/weedKnownBlastTab.c
./hg/oneShot/fixGdup/fixGdup.c
./hg/oneShot/spSize/spSize.c
./hg/oneShot/patchDir/patchDir.c
./hg/oneShot/findToFixBedGraphLimits/findToFixBedGraphLimits.c
./hg/oneShot/tetDensity/tetDensity.c
./hg/oneShot/howBadNt/howBadNt.c
./hg/oneShot/findContigsWithClones/findContigsWithClones.c
./hg/oneShot/testTableExists/testTableExists.c
./hg/oneShot/addChrPsl/addChrPsl.c
./hg/oneShot/raPriority/raPriority.c
./hg/oneShot/clonesInAgp/clonesInAgp.c
./hg/oneShot/freen/freen.c
./hg/oneShot/dupeFoo/dupeFoo.c
./hg/oneShot/testIxx/testIxx.c
./hg/oneShot/bwTest/bwTest.c
./hg/oneShot/doOmimGeneSymbols/doOmimGeneSymbols.c
./hg/oneShot/compilerError/compilerError.c
./hg/oneShot/splitNcbiFa/splitNcbiFa.c
./hg/oneShot/oo21Nts/oo21Nts.c
./hg/oneShot/hgFreen/hgFreen.c
./hg/oneShot/patchNtAgp/patchNtAgp.c
./hg/oneShot/clumpEst3/clumpEst3.c
./hg/oneShot/rcvs/rcvs.c
./hg/oneShot/makeTrackDbTagVals/makeTrackDbTagVals.c
./hg/oneShot/flagMhcClones/flagMhcClones.c
./hg/oneShot/newClones/newClones.c
./hg/oneShot/joinToPatch/joinToPatch.c
./hg/oneShot/fakeBedGraph/fakeBedGraph.c
./hg/oneShot/bargeVsMap/bargeVsMap.c
./hg/oneShot/faFiltMasked/faFiltMasked.c
./hg/oneShot/createScaffoldsAgp/createScaffoldsAgp.c
./hg/oneShot/testCart/cart.h
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./hg/oneShot/testCart/testCart.c
./hg/oneShot/testSearch/testSearch.c
./hg/oneShot/addMhcClones/addMhcClones.c
./hg/oneShot/parseOmimDisorder/parseOmimDisorder.c
./hg/oneShot/testIntersect/testIntersect.c
./hg/oneShot/fakeChromGraph/fakeChromGraph.c
./hg/oneShot/affyAllExonGSColumn/affyAllExonGSColumn.c
./hg/oneShot/tdbRewriteViewsToSubtracks/tdbRewriteViewsToSubtracks.c
./hg/oneShot/chromPosLookup/chromPosLookup.c
./hg/visiGene/vgPatchJax/vgPatchJax.c
./hg/visiGene/vgLoadMahoney/mahoney.h
./hg/visiGene/vgLoadMahoney/vgLoadMahoney.c
./hg/visiGene/vgLoadMahoney/mahoney.c
./hg/visiGene/visiGeneLoad/visiGeneLoad.c
./hg/visiGene/vgGetText/visiGene.h
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./hg/visiGene/vgGetText/visiGene.c
./hg/visiGene/vgLoadJax/vgLoadJax.c
./hg/visiGene/vgRemoveSubmission/vgRemoveSubmission.c
./hg/visiGene/vgPrepImage/jpgDec.c
./hg/visiGene/vgPrepImage/jpgTiles.c
./hg/visiGene/vgPrepImage/jp2Dec.c
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./hg/visiGene/visiGeneTest/visiGeneTest.c
./hg/visiGene/vgLoadNibb/vgLoadNibb.c
./hg/visiGene/gensat/gensatRandomXml/gensatRandomXml.c
./hg/visiGene/gensat/gensatFixFull/gensatFixFull.c
./hg/visiGene/gensat/gensatFtpList/gensatFtpList.c
./hg/visiGene/gensat/lib/gs.h
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./hg/visiGene/gensat/vgLoadGensat/vgLoadGensat.c
./hg/visiGene/gensat/gensatFtpImages/gensatFtpImages.c
./hg/visiGene/gensat/gensatImageDownload/gensatImageDownload.c
./hg/visiGene/vgChangeContributors/vgChangeContributors.c
./hg/visiGene/vgLoadAllen/vgLoadAllen.c
./hg/visiGene/visiGeneSearch/visiGeneSearch.c
./hg/visiGene/vgProbeTrack/vgPrb.h
./hg/visiGene/vgProbeTrack/vgPrbMap.h
./hg/visiGene/vgProbeTrack/vgProbeTrack.c
./hg/visiGene/vgProbeTrack/vgPrbAliAll.h
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./hg/visiGene/knownToVisiGene/knownToVisiGene.c
./hg/visiGene/jackson/mysqlEscape/mysqlEscape.c
./hg/visiGene/hgVisiGene/probePage.h
./hg/visiGene/hgVisiGene/captionElement.h
./hg/visiGene/hgVisiGene/visiSearch.c
./hg/visiGene/hgVisiGene/testVisiSearch.c
./hg/visiGene/hgVisiGene/fullTextExperiment.c
./hg/visiGene/hgVisiGene/configPage.h
./hg/visiGene/hgVisiGene/visiSearch.h
./hg/visiGene/hgVisiGene/hgVisiGene.h
./hg/visiGene/hgVisiGene/printCaption.h
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./hg/visiGene/hgVisiGene/printCaption.c
./hg/visiGene/hgVisiGene/hgVisiGene.c
./hg/visiGene/hgVisiGene/configPage.c
./hg/baseMask/bedToBaseMask.c
./hg/baseMask/baseMaskToBed.c
./hg/baseMask/trackToBaseMask.c
./hg/baseMask/cachedMask.c
./hg/baseMask/baseMask.c
./hg/txGene/txGeneProtAndRna/txGeneProtAndRna.c
./hg/txGene/txGeneFromBed/txGeneFromBed.c
./hg/txGene/txGeneColor/txGeneColor.c
./hg/txGene/txGeneExplainUpdate1/txGeneExplainUpdate1.c
./hg/txGene/txGeneSeparateNoncoding/txGeneSeparateNoncoding.c
./hg/txGene/txGeneXref/txGeneXref.c
./hg/txGene/txGeneCdsMap/txGeneCdsMap.c
./hg/txGene/txGeneAddOldUnmapped/txGeneAddOldUnmapped.c
./hg/txGene/txGeneCanonical/txGeneCanonical.c
./hg/txGene/txGeneAlias/txGeneAlias.c
./hg/txGene/txGeneAltProt/txGeneAltProt.c
./hg/txGene/txGeneExplainUpdate2/txGeneExplainUpdate2.c
./hg/txGene/txGeneAccession/txGeneAccession.c
./hg/pslDropOverlap/pslDropOverlap.c
./hg/hgTrackUi/hgTrackUi.c
./hg/hgTrackUi/encodePeakUi.c
./hg/hgTrackUi/hgTrackUi.h
./hg/hgTrackUi/cgapSageUi.c
./hg/pslDiff/pslDiff.c
./hg/pslDiff/pslSets.h
./hg/pslDiff/pslSets.c
./hg/pslSelect/pslSelect.c
./hg/hgBatch/hgBatch.c
./hg/pslMaxMap/pslMaxMap.c
./hg/patCount/patCount.c
./hg/genePredToFakePsl/genePredToFakePsl.c
./hg/hgCustom/hgCustom.c
./hg/trfBig/trfBig.c
./hg/pslxToFa/pslxToFa.c
./hg/inc/plasEndPairs.h
./hg/inc/gbSeq.h
./hg/inc/sgdOther.h
./hg/inc/clonePos.h
./hg/inc/joiner.h
./hg/inc/geneTree.h
./hg/inc/kgProtAlias.h
./hg/inc/ecAttributeCode.h
./hg/inc/cogsxra.h
./hg/inc/snpUi.h
./hg/inc/scopDes.h
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./hg/inc/vntr.h
./hg/inc/recombRateMouse.h
./hg/inc/chainLink.h
./hg/inc/findKGAlias.h
./hg/inc/ccdsGeneMap.h
./hg/inc/oreganno.h
./hg/inc/wgRna.h
./hg/inc/sage.h
./hg/inc/affyAtlas.h
./hg/inc/jaxQTL2.h
./hg/inc/defaultDb.h
./hg/inc/gbExtFile.h
./hg/inc/ecAttribute.h
./hg/inc/jsHelper.h
./hg/inc/mouseOrtho.h
./hg/inc/visiGene.h
./hg/inc/affyAllExonProbe.h
./hg/inc/ensPhusionBlast.h
./hg/inc/cutter.h
./hg/inc/featureBits.h
./hg/inc/bed8Attrs.h
./hg/inc/rnaSecStr.h
./hg/inc/HInv.h
./hg/inc/tagAlign.h
./hg/inc/pgSnp.h
./hg/inc/trackVersion.h
./hg/inc/spDb.h
./hg/inc/transMapGene.h
./hg/inc/taxonDivision.h
./hg/inc/lowelabPfamHit.h
./hg/inc/cdsSpec.h
./hg/inc/gvUi.h
./hg/inc/txEdgeBed.h
./hg/inc/borkPseudoHom.h
./hg/inc/allpredictions.h
./hg/inc/dless.h
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./hg/inc/trashDir.h
./hg/inc/stsMapMouseNew.h
./hg/inc/jaxOrtholog.h
./hg/inc/gbMiscDiff.h
./hg/inc/rnaGroup.h
./hg/inc/fbTables.h
./hg/inc/loweutils.h
./hg/inc/cnpSharp2.h
./hg/inc/rankProp.h
./hg/inc/hdb.h
./hg/inc/affy10KDetails.h
./hg/inc/stsMapMouse.h
./hg/inc/snpMap.h
./hg/inc/snpSeq.h
./hg/inc/mouseSynWhd.h
./hg/inc/ccdsInfo.h
./hg/inc/jaxQTL3.h
./hg/inc/ancientRref.h
./hg/inc/geneSimilarities.h
./hg/inc/softberryHom.h
./hg/inc/knownInfo.h
./hg/inc/bed6FloatScore.h
./hg/inc/microarray.h
./hg/inc/acemblyClass.h
./hg/inc/hgGene.h
./hg/inc/gbRNAs.h
./hg/inc/cdsEvidence.h
./hg/inc/affyPairs.h
./hg/inc/geneCheck.h
./hg/inc/taxonName.h
./hg/inc/agpFrag.h
./hg/inc/hgSeq.h
./hg/inc/estOrientInfo.h
./hg/inc/mapSts.h
./hg/inc/kg1ToKg2.h
./hg/inc/pcrResult.h
./hg/inc/chromBins.h
./hg/inc/cogs.h
./hg/inc/rmskOut.h
./hg/inc/pseudoGeneLink.h
./hg/inc/dnaMarkovSql.h
./hg/inc/hgFind.h
./hg/inc/rangeTreeFile.h
./hg/inc/recombRate.h
./hg/inc/hCommon.h
./hg/inc/pslWQueryID.h
./hg/inc/ld2.h
./hg/inc/expRecord.h
./hg/inc/jgiGene.h
./hg/inc/megablastInfo.h
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./hg/hgTracks/bigWigTrack.c
./hg/hgTracks/chainTrack.c
./hg/hgTracks/sampleTracks.c
./hg/hgTracks/coverageTrack.c
./hg/hgTracks/simpleTracks.c
./hg/hgTracks/container.c
./hg/hgTracks/loweLabTracks.c
./hg/hgTracks/bigWarn.c
./hg/hgTracks/bigBedTrack.c
./hg/hgTracks/cutterTrack.c
./hg/hgTracks/wabaTrack.c
./hg/hgTracks/transMapTracks.c
./hg/hgTracks/mafTrack.c
./hg/hgTracks/chromGraphTrack.c
./hg/hgTracks/mainMain.c
./hg/zoo/zooLib/util.c
./hg/zoo/zooLib/misc.c
./hg/zoo/zooLib/args.c
./hg/zoo/zooLib/read_malign.c
./hg/zoo/pslToFa/pslToFa.c
./hg/zoo/inc/read_malign.h
./hg/zoo/inc/util.h
./hg/zoo/inc/args.h
./hg/zoo/inc/misc.h
./hg/zoo/alignToPsl/alignToPsl.c
./hg/zoo/transitivityCheck/transitivity.c
./hg/zoo/pslUnpackBlocks/pslUnpackBlocks.c
./hg/zoo/analyze4d/analyze.c
./hg/updateStsInfo/updateStsInfo.c
./hg/fragPart/fragPart.c
./hg/test/foo.c
./hg/test/test.c
./hg/test/foo.h
./hg/test/otest/test1.c
./hg/gpStats/gpStats.c
./hg/zfishBacClonesandSts/zfishBacClonesandSts.c
./hg/hgText/hgText.h
./hg/hgText/hgText.c
./hg/hgText/hgWigText.c
./hg/splignToPsl/splignToPsl.c
./hg/splitFa/splitFa.c
./hg/cartReset/cartReset.c
./hg/affyGnf/affyPslAndAtlasToBed.c
./hg/affyGnf/affyUclaMergePslData.c
./hg/affyGnf/pslAffySelect.c
./hg/nci60/findStanAlignments.c
./hg/nci60/stanToBedAndExpRecs.c
./hg/autoDtd/autoDtd.c
./hg/hgApi/hgApi.c
./hg/bedIntersect/bedIntersect.c
./hg/mdToNcbiLift/mdToNcbiLift.c
./hg/qaAgpToQacIdx/qaAgpToQacIdx.c
./hg/agpMergeChromScaf/agpMergeChromScaf.c
./hg/pslGlue/pslGlue.c
./hg/pslSomeRecords/pslSomeRecords.c
./hg/checkTableCoords/checkTableCoords.c
./hg/logCrawl/crawlForHogs/crawlForHogs.c
./hg/logCrawl/accessLogWigs/accessLogWigs.c
./hg/logCrawl/accessLogSort/accessLogSort.c
./hg/logCrawl/sessionDbCrawl/sessionDbCrawl.c
./hg/logCrawl/hgAccessCrawl/hgAccessCrawl.c
./hg/logCrawl/accessLogFilter/accessLogFilter.c
./hg/logCrawl/ticksToWig/ticksToWig.c
./hg/logCrawl/crawlForPosAndTime/crawlForPosAndTime.c
./hg/logCrawl/accessLogMerge/accessLogMerge.c
./hg/dbTrash/dbTrash.c
./hg/formatZfishSts/formatZfishSts.c
./hg/orthoMap/orthoEvaluate.c
./hg/orthoMap/orthoEval.c
./hg/orthoMap/orthoMap.c
./hg/orthoMap/orthoEval.h
./hg/orthoMap/mgcFastaForBed.c
./hg/orthoMap/agxToIntronBeds.c
./hg/orthoMap/bedToFrames.c
./hg/orthoMap/orthoPickIntron.c
./hg/gisaid/gisaidSample/gisaidSample.h
./hg/gisaid/gisaidSample/demog.c
./hg/gisaid/gisaidSample/gisaidSample.c
./hg/gisaid/gisaidSample/sequence.c
./hg/gisaid/gisaidSubj/gisaidSubj.h
./hg/gisaid/gisaidSubj/gisaidSubj.c
./hg/gisaid/gisaidSubj/demog.c
./hg/gisaid/gisaidSubj/sequence.c
./hg/gisaid/gisaidTable/gisaidTable.c
./hg/gisaid/gisaidTable/gisaidSubjInfo.c
./hg/gisaid/gisaidTable/configure.c
./hg/gisaid/gisaidTable/advFilter.c
./hg/gisaid/gisaidTable/gisaidTable.h
./hg/gisaid/gisaidTable/getSeq.c
./hg/altGraph/test.c
./hg/altGraph/altGraph.c
./hg/rnaStructure/rnaPhylo/rnaPhylo.c
./hg/rnaStructure/utrFa/utrFa.c
./hg/rnaStructure/hgLoadRnaFold/hgLoadRnaFold.c
./hg/rnaStructure/rnaFoldBig/rnaFoldBig.c
./hg/getFeatDna/getFeatDna.c
./hg/scanRa/scanRa.c
./hg/liftOver/liftOver.c
./hg/liftOver/liftOverMerge.c
./hg/ffaToFa/ffaToFa.c
./hg/protein/kgSelect/kgSelect.c
./hg/protein/getInterProFa/getInterProFa.c
./hg/protein/kgBestRef2/kgResultBestRef2.c
./hg/protein/kgBestRef2/kgPrepBestRef2.c
./hg/protein/fixAgp/fixAgp.c
./hg/protein/spOrganism/spOrganism.c
./hg/protein/kgProtAliasNCBI/kgProtAliasNCBI.c
./hg/protein/omimCheckAv/omimCheckAv.c
./hg/protein/scopCollapse/scopCollapse.c
./hg/protein/pbCalDistGlobal/pbCalDistGlobal.c
./hg/protein/spToDb/spToDb.c
./hg/protein/spToDb/spToDb.myVersion.c
./hg/protein/dv2/dv2.c
./hg/protein/pbGlobal/pbGlobal.c
./hg/protein/kgXref2/kgXref2.c
./hg/protein/kgAliasKgXref/kgAliasKgXref.c
./hg/protein/pfamXref/pfamXref.c
./hg/protein/pbTracks/pbTracks.c
./hg/protein/kgPick0/kgPickPrep.c
./hg/protein/lib/unirefTbl.c
./hg/protein/lib/spKgMap.c
./hg/protein/lib/uniref.c
./hg/protein/lib/doStamps.c
./hg/protein/lib/spMapper.c
./hg/protein/lib/doTracks.c
./hg/protein/lib/doSam.c
./hg/protein/lib/pbUtil.c
./hg/protein/lib/domains.c
./hg/protein/kgAttachKegg/kgAttachKegg.c
./hg/protein/spTest/spTest.c
./hg/protein/gadPos/gadPos.c
./hg/protein/kgAliasP/kgAliasP.c
./hg/protein/spToSpXref2/spToSpXref2.c
./hg/protein/kgGetPep/kgGetPep.c
./hg/protein/kgUniq/kgUniq.c
./hg/protein/kgProtAlias/kgProtAlias.c
./hg/protein/kgBestMrna2/kgResultBestMrna2.c
./hg/protein/kgBestMrna2/kgPrepBestMrna2.c
./hg/protein/kgCheck2/kgCheck2.c
./hg/protein/kgBioCyc1/kgBioCyc1.c
./hg/protein/kgXref/kgXref.c
./hg/protein/omimParseRec/omimParseRec.c
./hg/protein/spm7/spm7.c
./hg/protein/omimParseAv/omimParseAv.c
./hg/protein/pbCalDist/pbCalDist.c
./hg/protein/hmmPfamToTab/hmmPfamToTab.c
./hg/protein/spDbAddVarSplice/spDbAddVarSplice.c
./hg/protein/pfamToGoRdf/pfamToGoRdf.c
./hg/protein/pfamToGoRdf/rdf.h
./hg/protein/pfamToGoRdf/rdf.c
./hg/protein/kgAliasM/kgAliasM.c
./hg/protein/spXref2/spXref2.c
./hg/protein/inc/pbStampPict.h
./hg/protein/inc/unirefTbl.h
./hg/protein/inc/spMapper.h
./hg/protein/inc/spKgMap.h
./hg/protein/inc/pbTracks.h
./hg/protein/inc/uniref.h
./hg/protein/inc/pbCalPi.h
./hg/protein/spm3/spm3.c
./hg/protein/fixMd/fixMd.c
./hg/protein/kgPick/kgPick.c
./hg/protein/spXref3/spXref3.c
./hg/protein/pbHgnc/pbHgnc.c
./hg/protein/spToProteins/spToProteins.c
./hg/protein/kgCheck/kgCheck.c
./hg/protein/kgBestMrna/kgPrepBestMrna2.c
./hg/protein/kgBestMrna/kgResultBestMrna.c
./hg/protein/kgBestMrna/kgPrepBestMrna.c
./hg/protein/pbGateway/pbGateway.c
./hg/protein/spLoadRankProp/rankPropProt.c
./hg/protein/spLoadRankProp/rankPropProt.h
./hg/protein/spLoadRankProp/spLoadRankProp.c
./hg/protein/spToProteinsVar/spToProteinsVar.c
./hg/protein/blastRecipBest/blastRecipBest.c
./hg/protein/kgPepMrna/kgPepMrna.c
./hg/protein/spLoadPsiBlast/spLoadPsiBlast.c
./hg/protein/kgPutBack/kgPutBack.c
./hg/protein/pbCalResStd/pbCalResStd.c
./hg/protein/spm6/spm6.c
./hg/protein/rmKGPepMrna/rmKGPepMrna.c
./hg/protein/kgGetCds/kgGetCds.c
./hg/protein/kgBioCyc0/kgBioCyc0.c
./hg/protein/pbCalPi/pbCalPi.c
./hg/protein/pbCalResStdGlobal/pbCalResStdGlobal.c
./hg/protein/kgAliasRefseq/kgAliasRefseq.c
./hg/liftAgp/liftAgp.c
./hg/makeDb/hgLoadSample/hgLoadSample.c
./hg/makeDb/hgRgdParsePathwayObo/hgRgdParsePathwayObo.c
./hg/makeDb/hgLoadAxt/hgLoadAxt.c
./hg/makeDb/hgRatioMicroarray/hgRatioMicroarray.c
./hg/makeDb/hgWaba/hgWaba.c
./hg/makeDb/hgKnownMore/hgKnownMore.c
./hg/makeDb/hgKnownMore/hugoMulti.c
./hg/makeDb/hgKnownMore/hugoMulti.h
./hg/makeDb/hgKgMrna/hgKgMrna.c
./hg/makeDb/schema/joinerGraph/joinerGraph.c
./hg/makeDb/schema/joinTwoInfo/joinTwoInfo.c
./hg/makeDb/schema/dbFindFieldsWith/dbFindFieldsWith.c
./hg/makeDb/schema/makeTableDescriptions/makeTableDescriptions.c
./hg/makeDb/schema/joinableFields/joinableFields.c
./hg/makeDb/schema/joinerCheck/joinerCheck.c
./hg/makeDb/schema/dbSnoop/dbSnoop.c
./hg/makeDb/hgLoadItemAttr/hgLoadItemAttr.c
./hg/makeDb/hgTpf/hgTpf.c
./hg/makeDb/hgMedianMicroarray/hgMedianMicroarray.c
./hg/makeDb/hgLoadChain/hgLoadChain.c
./hg/makeDb/hgCalStat/hgCalStat.c
./hg/makeDb/hgLoadOut/hgLoadOut.c
./hg/makeDb/simpleGap/simpleGap.c
./hg/makeDb/hgLoadChromGraph/hgLoadChromGraph.c
./hg/makeDb/hgFakeAgp/hgFakeAgp.c
./hg/makeDb/hgDropSplitTable/hgDropSplitTable.c
./hg/makeDb/trackDbPatch/trackDbPatch.c
./hg/makeDb/hgSanger20/hgSanger20.c
./hg/makeDb/ldHgGene/ldHgGene.c
./hg/makeDb/hgFindSpec/hgFindSpec.c
./hg/makeDb/hgStanfordMicroarray/hgStanfordMicroarray.c
./hg/makeDb/hgLoadBlastTab/hgLoadBlastTab.c
./hg/makeDb/hgMapMicroarray/hgMapMicroarray.c
./hg/makeDb/hgGenericMicroarray/hgGenericMicroarray.c
./hg/makeDb/hgTrackDb/hgTrackDb.c
./hg/makeDb/hgNibSeq/hgNibSeq.c
./hg/makeDb/hgStsAlias/hgStsAlias.c
./hg/makeDb/hgTomRough/hgTomRough.c
./hg/makeDb/hgTomRough/tomRough.c
./hg/makeDb/hgTomRough/tomRough.h
./hg/makeDb/hgLoadMafFrames/hgLoadMafFrames.c
./hg/makeDb/hgLoadNet/hgLoadNet.c
./hg/makeDb/hgSanger22/hgSanger22.c
./hg/makeDb/hgLoadBed/hgLoadBed.c
./hg/makeDb/hgCountAlign/slidingWin.c
./hg/makeDb/hgCountAlign/hgCountAlign.c
./hg/makeDb/hgCountAlign/winCounts.h
./hg/makeDb/hgCountAlign/slidingWin.h
./hg/makeDb/hgCountAlign/align.h
./hg/makeDb/hgCountAlign/align.c
./hg/makeDb/hgCountAlign/winCounts.c
./hg/makeDb/hgCtgPos/liftSpec.c
./hg/makeDb/hgCtgPos/hgCtgPos.c
./hg/makeDb/hgCtgPos/liftSpec.h
./hg/makeDb/hgGeneBands/hgGeneBands.c
./hg/makeDb/hgBbiDbLink/hgBbiDbLink.c
./hg/makeDb/hgGetKgUrls/hgGetKgUrls.c
./hg/makeDb/hgKgGetText/hgKgGetText.c
./hg/makeDb/mdbUpdate/mdbUpdate.c
./hg/makeDb/mdbUpdate/mdbPrint.c
./hg/makeDb/tfbsConsSort/tfbsConsSort.c
./hg/makeDb/hgCutters/hgCutters.c
./hg/makeDb/hgRenameSplitTable/hgRenameSplitTable.c
./hg/makeDb/hgGcPercent/hgGcPercent.c
./hg/makeDb/hgLoadWiggle/hgDumpWiggle.c
./hg/makeDb/hgLoadWiggle/wigEncode.c
./hg/makeDb/hgLoadWiggle/hgLoadWiggle.c
./hg/makeDb/hgLoadWiggle/hgWiggle.c
./hg/makeDb/outside/hgSoftPromoter/hgSoftPromoter.c
./hg/makeDb/outside/hgSuperfam/hgSuperfam.c
./hg/makeDb/outside/hgBioCyc/hgBioCyc.c
./hg/makeDb/outside/hgPhMouse/hgPhMouse.c
./hg/makeDb/outside/hgAvidShortBed/hgAvidShortBed.c
./hg/makeDb/outside/hgCGAP/hgCGAP.c
./hg/makeDb/outside/sanger22gtf/sanger22gtf.c
./hg/makeDb/outside/hgRnaGenes/hgRnaGenes.c
./hg/makeDb/outside/hgKegg/hgKegg.c
./hg/makeDb/outside/hgExonerate/hgExonerate.c
./hg/makeDb/outside/nibb/nibbPrepImages/nibbPrepImages.c
./hg/makeDb/outside/nibb/nibbImageProbes/nibbImageProbes.c
./hg/makeDb/outside/nibb/nibbParseImageDir/nibbParseImageDir.c
./hg/makeDb/outside/nibb/nibbNameFix/nibbNameFix.c
./hg/makeDb/outside/cgapSage/cgapSageFind/uninteresting.c
./hg/makeDb/outside/cgapSage/cgapSageFind/cgapSageFind.h
./hg/makeDb/outside/cgapSage/cgapSageFind/cgapSageFind.c
./hg/makeDb/outside/cgapSage/cgapSageBedAddFreqs/cgapSageBedAddFreqs.c
./hg/makeDb/outside/hgFlyBase/hgFlyBase.c
./hg/makeDb/outside/hgSoftberryHom/hgSoftberryHom.c
./hg/makeDb/outside/hgLoadEranModules/esMotif.h
./hg/makeDb/outside/hgLoadEranModules/hgLoadEranModules.c
./hg/makeDb/outside/hgLoadEranModules/esMotif.c
./hg/makeDb/outside/hgFiberglass/hgFiberglass.c
./hg/makeDb/outside/vegaBuildInfo/vegaBuildInfo.c
./hg/makeDb/outside/hgLsSnpPdbLoad/hgLsSnpPdbLoad.c
./hg/makeDb/outside/samHit/samHit.c
./hg/makeDb/outside/hgGnfMicroarray/hgGnfMicroarray.c
./hg/makeDb/outside/allenBrain/allenCleanup/allenCleanup.c
./hg/makeDb/outside/allenBrain/allenCollectSeq/allenCollectSeq.c
./hg/makeDb/outside/exonerateGffDoctor/exonerateGffDoctor.c
./hg/makeDb/outside/hgJaxQtl/hgJaxQtl.c
./hg/makeDb/outside/hgKegg2/hgKegg2.c
./hg/makeDb/outside/yeast/hgSgdGfp/hgSgdGfp.c
./hg/makeDb/outside/yeast/hgSgdGff3/hgSgdGff3.c
./hg/makeDb/outside/yeast/fixHarbisonMotifs/fixHarbisonMotifs.c
./hg/makeDb/outside/yeast/hgYeastRegCode/hgYeastRegCode.c
./hg/makeDb/outside/yeast/checkSgdSync/checkSgdSync.c
./hg/makeDb/outside/yeast/hgSgdPep/hgSgdPep.c
./hg/makeDb/outside/hgKegg3/hgKegg3.c
./hg/makeDb/htTpf/htTpf.c
./hg/makeDb/hgDeleteChrom/hgDeleteChrom.c
./hg/makeDb/hgLoadMaf/hgLoadMaf.c
./hg/makeDb/hgLoadMaf/hgLoadMafSummary.c
./hg/makeDb/hgExperiment/hgExperiment.c
./hg/makeDb/hgExtFileCheck/hgExtFileCheck.c
./hg/makeDb/hgClonePos/gsSeqInfo.h
./hg/makeDb/hgClonePos/gsSeqInfo.c
./hg/makeDb/hgClonePos/hgClonePos.c
./hg/makeDb/tfbsConsLoc/seq.h
./hg/makeDb/tfbsConsLoc/util.c
./hg/makeDb/tfbsConsLoc/tfbsConsLoc.c
./hg/makeDb/tfbsConsLoc/tfbsConsLocUtil.c
./hg/makeDb/tfbsConsLoc/util.h
./hg/makeDb/tfbsConsLoc/seq.c
./hg/makeDb/tfbsConsLoc/tfbsConsLoc.h
./hg/makeDb/tfbsConsLoc/matt-maf.c
./hg/makeDb/tfbsConsLoc/matt-maf.h
./hg/makeDb/tfbsConsLoc/tfbsConsLocUtil.h
./hg/makeDb/trackDbRaFormat/trackDbRaFormat.c
./hg/makeDb/hgGetNrOmimGene/hgGetNrOmimGene.c
./hg/makeDb/hgLoadGenePred/hgLoadGenePred.c
./hg/makeDb/hgBedsToBedExps/bToBeCfg.c
./hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c
./hg/makeDb/hgBedsToBedExps/bToBeCfg.h
./hg/makeDb/hgLoadSeq/hgLoadSeq.c
./hg/makeDb/hgLoadSqlTab/hgLoadSqlTab.c
./hg/makeDb/hgPar/hgPar.c
./hg/makeDb/hgPar/parSpec.h
./hg/makeDb/hgPar/parSpec.c
./hg/makeDb/hgLoadPsl/hgLoadPsl.c
./hg/makeDb/hgTraceInfo/hgTraceInfo.c
./hg/makeDb/hgKnownMore.oo21/hgKnownMore.c
./hg/makeDb/hgKnownMore.oo21/hugoMulti.c
./hg/makeDb/hgKnownMore.oo21/hugoMulti.h
./hg/makeDb/genbank/src/process/gbParse.h
./hg/makeDb/genbank/src/process/gbProcessedCheck.c
./hg/makeDb/genbank/src/process/gbProcess.c
./hg/makeDb/genbank/src/process/gbParse.c
./hg/makeDb/genbank/src/mgc/mgcLibrary.h
./hg/makeDb/genbank/src/mgc/mgcClone.c
./hg/makeDb/genbank/src/mgc/mgcLibrary.c
./hg/makeDb/genbank/src/mgc/mgcClone.h
./hg/makeDb/genbank/src/mgc/mgcStage1.h
./hg/makeDb/genbank/src/mgc/mgcImport.c
./hg/makeDb/genbank/src/mgc/mgcFullength.c
./hg/makeDb/genbank/src/mgc/mgcStage1.c
./hg/makeDb/genbank/src/mgc/mgcDbLoad.c
./hg/makeDb/genbank/src/mgc/mgcFullength.h
./hg/makeDb/genbank/src/repair/refPepRepair.h
./hg/makeDb/genbank/src/repair/refPepRepair.c
./hg/makeDb/genbank/src/repair/repairExtFile.c
./hg/makeDb/genbank/src/dbload/gbMetaData.h
./hg/makeDb/genbank/src/dbload/gbMetaData.c
./hg/makeDb/genbank/src/dbload/gbMDParse.h
./hg/makeDb/genbank/src/dbload/gbLoadRna.c
./hg/makeDb/genbank/src/dbload/dbLoadOptions.h
./hg/makeDb/genbank/src/dbload/gbMDParse.c
./hg/makeDb/genbank/src/dbload/gbGeneTbl.h
./hg/makeDb/genbank/src/dbload/gbAlignData.h
./hg/makeDb/genbank/src/dbload/gbBuildState.c
./hg/makeDb/genbank/src/dbload/gbIgnoreDelete.h
./hg/makeDb/genbank/src/dbload/gbBuildState.h
./hg/makeDb/genbank/src/dbload/gbAlignTbl.h
./hg/makeDb/genbank/src/dbload/dbLoadOptions.c
./hg/makeDb/genbank/src/dbload/gbAlignData.c
./hg/makeDb/genbank/src/dbload/dbLoadPartitions.c
./hg/makeDb/genbank/src/dbload/dbLoadPartitions.h
./hg/makeDb/genbank/src/dbload/gbGeneTbl.c
./hg/makeDb/genbank/src/dbload/gbAlignTbl.c
./hg/makeDb/genbank/src/dbload/gbIgnoreDelete.c
./hg/makeDb/genbank/src/extFileUpdate/extFileUpdate.c
./hg/makeDb/genbank/src/extFileUpdate/raInfoTbl.c
./hg/makeDb/genbank/src/extFileUpdate/raInfoTbl.h
./hg/makeDb/genbank/src/lib/gbDefs.c
./hg/makeDb/genbank/src/lib/mgcStatusTbl.c
./hg/makeDb/genbank/src/lib/gbSql.c
./hg/makeDb/genbank/src/lib/gbConf.c
./hg/makeDb/genbank/src/lib/gbPipeline.c
./hg/makeDb/genbank/src/lib/imageCloneTbl.c
./hg/makeDb/genbank/src/lib/gbStatusTbl.c
./hg/makeDb/genbank/src/lib/gbIgnore.c
./hg/makeDb/genbank/src/lib/sqlUpdater.c
./hg/makeDb/genbank/src/lib/gbAligned.c
./hg/makeDb/genbank/src/lib/seqTbl.c
./hg/makeDb/genbank/src/lib/gbUpdate.c
./hg/makeDb/genbank/src/lib/sqlDeleter.c
./hg/makeDb/genbank/src/lib/uniqueStrTbl.c
./hg/makeDb/genbank/src/lib/gbEntry.c
./hg/makeDb/genbank/src/lib/gbProcessed.c
./hg/makeDb/genbank/src/lib/gbFa.c
./hg/makeDb/genbank/src/lib/gbFileOps.c
./hg/makeDb/genbank/src/lib/extFileTbl.c
./hg/makeDb/genbank/src/lib/gbGenome.c
./hg/makeDb/genbank/src/lib/gbVerb.c
./hg/makeDb/genbank/src/lib/gbRelease.c
./hg/makeDb/genbank/src/lib/gbIndex.c
./hg/makeDb/genbank/src/lib/gbLoadedTbl.c
./hg/makeDb/genbank/src/orfeome/orfeomeDbLoad.c
./hg/makeDb/genbank/src/orfeome/orfeomeImageIds.c
./hg/makeDb/genbank/src/orfeome/orfeomeImageIds.h
./hg/makeDb/genbank/src/refSeqCheck/refSeqCheck.c
./hg/makeDb/genbank/src/ccds/ccdsLocationsJoin.h
./hg/makeDb/genbank/src/ccds/ccdsLocationsJoin.c
./hg/makeDb/genbank/src/ccds/mkCcdsGeneMap.c
./hg/makeDb/genbank/src/ccds/ccdsCommon.c
./hg/makeDb/genbank/src/ccds/ccdsImport.c
./hg/makeDb/genbank/src/ccds/ccdsMkTables.c
./hg/makeDb/genbank/src/ccds/ccdsCommon.h
./hg/makeDb/genbank/src/inc/gbUpdate.h
./hg/makeDb/genbank/src/inc/gbFileOps.h
./hg/makeDb/genbank/src/inc/gbGenome.h
./hg/makeDb/genbank/src/inc/gbMem.h
./hg/makeDb/genbank/src/inc/gbAligned.h
./hg/makeDb/genbank/src/inc/gbConf.h
./hg/makeDb/genbank/src/inc/gbRelease.h
./hg/makeDb/genbank/src/inc/gbFa.h
./hg/makeDb/genbank/src/inc/imageCloneTbl.h
./hg/makeDb/genbank/src/inc/sqlDeleter.h
./hg/makeDb/genbank/src/inc/sqlUpdater.h
./hg/makeDb/genbank/src/inc/gbEntry.h
./hg/makeDb/genbank/src/inc/gbProcessed.h
./hg/makeDb/genbank/src/inc/gbDefs.h
./hg/makeDb/genbank/src/inc/gbStatusTbl.h
./hg/makeDb/genbank/src/inc/gbIgnore.h
./hg/makeDb/genbank/src/inc/gbIndex.h
./hg/makeDb/genbank/src/inc/gbPipeline.h
./hg/makeDb/genbank/src/inc/gbLoadedTbl.h
./hg/makeDb/genbank/src/inc/uniqueStrTbl.h
./hg/makeDb/genbank/src/inc/gbVerb.h
./hg/makeDb/genbank/src/inc/extFileTbl.h
./hg/makeDb/genbank/src/inc/mgcStatusTbl.h
./hg/makeDb/genbank/src/inc/seqTbl.h
./hg/makeDb/genbank/src/inc/gbSql.h
./hg/makeDb/genbank/src/align/gbAlignInstall.c
./hg/makeDb/genbank/src/align/gbAlignCommon.h
./hg/makeDb/genbank/src/align/gbAlignGet.c
./hg/makeDb/genbank/src/align/gbAlignCommon.c
./hg/makeDb/genbank/src/selectWithPsl/selectWithPsl.c
./hg/makeDb/genbank/src/gbGetSeqs/seqData.c
./hg/makeDb/genbank/src/gbGetSeqs/pslData.h
./hg/makeDb/genbank/src/gbGetSeqs/gbGetSeqs.c
./hg/makeDb/genbank/src/gbGetSeqs/pepData.h
./hg/makeDb/genbank/src/gbGetSeqs/pslData.c
./hg/makeDb/genbank/src/gbGetSeqs/seqData.h
./hg/makeDb/genbank/src/gbGetSeqs/gbGetSeqs.h
./hg/makeDb/genbank/src/gbGetSeqs/raData.c
./hg/makeDb/genbank/src/gbGetSeqs/pepData.c
./hg/makeDb/genbank/src/gbGetSeqs/raData.h
./hg/makeDb/genbank/src/gbGetSeqs/oiData.h
./hg/makeDb/genbank/src/gbGetSeqs/oiData.c
./hg/makeDb/genbank/src/gbSanity/metaData.h
./hg/makeDb/genbank/src/gbSanity/chkGbIndex.h
./hg/makeDb/genbank/src/gbSanity/chkSeqTbl.c
./hg/makeDb/genbank/src/gbSanity/chkAlignTbls.c
./hg/makeDb/genbank/src/gbSanity/chkCommon.h
./hg/makeDb/genbank/src/gbSanity/chkGbIndex.c
./hg/makeDb/genbank/src/gbSanity/metaData.c
./hg/makeDb/genbank/src/gbSanity/chkSeqTbl.h
./hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.c
./hg/makeDb/genbank/src/gbSanity/chkCommon.c
./hg/makeDb/genbank/src/gbSanity/chkAlignTbls.h
./hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.h
./hg/makeDb/genbank/src/gbSanity/gbSanity.c
./hg/makeDb/genbank/src/gbConf/gbConf.c
./hg/makeDb/genbank/tests/gbFaCheck/gbFaCheck.c
./hg/makeDb/genbank/tests/index/gbIndexTest.c
./hg/makeDb/genbank/tests/subset/gbGetTestSubset.c
./hg/makeDb/hgLoadCdsEvidence/hgLoadCdsEvidence.c
./hg/makeDb/hgStsMarkers/hgStsMarkers.c
./hg/makeDb/hgMrnaRefseq/hgMrnaRefseq.c
./hg/makeDb/hgGoldGapGl/ntContig.h
./hg/makeDb/hgGoldGapGl/hgLoadGap.c
./hg/makeDb/hgGoldGapGl/hgGoldGapGl.c
./hg/makeDb/hgGoldGapGl/ntContig.c
./hg/makeDb/hgPepPred/hgPepPred.c
./hg/makeDb/hgAddLiftOverChain/hgAddLiftOverChain.c
./hg/hgsqldump/hgsqldump.c
./hg/pslSortAcc/pslSortAcc.c
./hg/hgHubConnect/hgHubConnect.c
./hg/gbGetEntries/gbGetEntries.c
./hg/autoXml/autoXml.c
./hg/autoXml/t/t.c
./hg/autoXml/test/polygon/expected/polygon.h
./hg/autoXml/test/polygon/expected/polygon.c
./hg/autoXml/test/dasGff/expected/dasGff.c
./hg/autoXml/test/dasGff/expected/dasGff.h
./hg/genePredHisto/genePredHisto.c
./hg/hgsqlTableDate/hgsqlTableDate.c
./hg/hgGenome/maf.c
./hg/hgGenome/wiggle.c
./hg/hgGenome/upload.c
./hg/hgGenome/hgGenome.c
./hg/hgGenome/mainPage.c
./hg/hgGenome/bedList.c
./hg/hgGenome/configure.c
./hg/hgGenome/sortGenes.c
./hg/hgGenome/browseRegions.c
./hg/hgGenome/hgGenome.h
./hg/hgGenome/custom.c
./hg/hgGenome/usage.c
./hg/hgGenome/clickOnImage.c
./hg/hgGenome/import.c
./hg/hgGenome/chromGraph.c
./hg/hgGenome/correlate.c
./hg/ctgToChromFa/ctgToChromFa.c
./hg/hgSession/hgSession.c
./hg/hgSession/hgSession.h
./hg/agpToFa/agpToFa.c
./hg/pslIntronsOnly/pslIntronsOnly.c
./hg/bedOrBlocks/bedOrBlocks.c
./hg/qa/testSearch.c
./hg/qa/apacheMonitor.c
./hg/qa/getChroms.c
./hg/qa/reviewIndexes.c
./hg/qa/countNib.c
./hg/qa/checkCardinality.c
./hg/qa/dumpNib.c
./hg/qa/timePosTable.c
./hg/qa/gbSeqCheck.c
./hg/qa/seqCheck.c
./hg/qa/checkChain.c
./hg/das/das.c
./hg/hgGeneRing/interaction.h
./hg/hgGeneRing/hgGeneRing.c
./hg/hgGeneRing/interaction.c
./hg/pslHitPercent/pslHitPercent.c
./hg/qacToQa/qacToQa.c
./hg/gbOneAcc/gbOneAcc.c
./hg/spideyToPsl/spideyToPsl.c
./hg/mouseStuff/ggcPic/ggcPic.c
./hg/mouseStuff/axtSort/axtSort.c
./hg/mouseStuff/axtPretty/axtPretty.c
./hg/mouseStuff/axtRescore/axtRescore.c
./hg/mouseStuff/mafToPsl/mafToPsl.c
./hg/mouseStuff/gcForBed/gcForBed.c
./hg/mouseStuff/axtIndex/axtIndex.c
./hg/mouseStuff/axtToMaf/axtToMaf.c
./hg/mouseStuff/chainDbToFile/chainDbToFile.c
./hg/mouseStuff/regionPicker/regionPicker.c
./hg/mouseStuff/netFilter/netFilter.c
./hg/mouseStuff/mafToXmfa/mafToXmfa.c
./hg/mouseStuff/chainAntiRepeat/chainAntiRepeat.c
./hg/mouseStuff/blastzPaper/blastzPaper.c
./hg/mouseStuff/axtDropOverlap/axtDropOverlap.c
./hg/mouseStuff/chainSwap/chainSwap.c
./hg/mouseStuff/axtBest/axtBest.c
./hg/mouseStuff/mafRanges/mafRanges.c
./hg/mouseStuff/mafToFa/mafToFa.c
./hg/mouseStuff/aliFragScore/aliFragScore.c
./hg/mouseStuff/netToAxt/netToAxt.c
./hg/mouseStuff/netClass/netClass.c
./hg/mouseStuff/axtRecipBest/axtRecipBest.c
./hg/mouseStuff/netSplit/netSplit.c
./hg/mouseStuff/chainScore/chainScore.c
./hg/mouseStuff/netStats/netStats.c
./hg/mouseStuff/phToPsl/phToPsl.c
./hg/mouseStuff/netChainSubset/netChainSubset.c
./hg/mouseStuff/exonMap/exonMap.c
./hg/mouseStuff/mafToAxt/mafToAxt.c
./hg/mouseStuff/chainToPsl/chainToPsl.c
./hg/mouseStuff/chainPreNet/chainPreNet.c
./hg/mouseStuff/axtSplitByTarget/axtSplitByTarget.c
./hg/mouseStuff/axtBestNear/axtBestNear.c
./hg/mouseStuff/splitSim/splitSim.c
./hg/mouseStuff/chainMergeSort/chainMergeSort.c
./hg/mouseStuff/axtSwap/axtSwap.c
./hg/mouseStuff/knownVsBlat/kvsSummary.c
./hg/mouseStuff/knownVsBlat/blatStats.c
./hg/mouseStuff/knownVsBlat/knownVsBlat.c
./hg/mouseStuff/knownVsBlat/blatStats.h
./hg/mouseStuff/chainStats/chainStats.c
./hg/mouseStuff/chainStitchId/chainStitchId.c
./hg/mouseStuff/chainOverlap/chainOverlap.c
./hg/mouseStuff/axtChain/axtChain.c
./hg/mouseStuff/axtToBed/axtToBed.c
./hg/mouseStuff/axtCalcMatrix/axtCalcMatrix.c
./hg/mouseStuff/xmfaToMaf/xmfaToMaf.c
./hg/mouseStuff/simpleChain/simpleChain.c
./hg/mouseStuff/rikenBestInCluster/rikenBestInCluster.c
./hg/mouseStuff/subsetTraces/subsetTraces.c
./hg/mouseStuff/chainStitch/chainStitch.c
./hg/mouseStuff/bedCoverage/bedCoverage.c
./hg/mouseStuff/axtToChain/axtToChain.c
./hg/mouseStuff/correctEst/correctEst.c
./hg/mouseStuff/whyConserved/whyConserved.c
./hg/mouseStuff/whyConserved/trackOverlap.c
./hg/mouseStuff/axtQueryCount/axtQueryCount.c
./hg/mouseStuff/chainNet/chainNet.c
./hg/mouseStuff/netToBed/netToBed.c
./hg/mouseStuff/mafCoverage/mafCoverage.c
./hg/mouseStuff/chainToAxt/chainToAxt.c
./hg/mouseStuff/libScan/libScan.c
./hg/mouseStuff/orthologBySynteny/orthologBySynteny.c
./hg/mouseStuff/pslMrnaCover/pslMrnaCover.c
./hg/mouseStuff/mafFetch/mafFetch.c
./hg/mouseStuff/calcGap/calcGap.c
./hg/mouseStuff/lavToPsl/lavToPsl.c
./hg/mouseStuff/axtSomeRecords/axtSomeRecords.c
./hg/mouseStuff/subsetAxt/subsetAxt.c
./hg/mouseStuff/netContigs/netContigs.c
./hg/mouseStuff/netSyntenic/netSyntenic.c
./hg/mouseStuff/axtAndBed/axtAndBed.c
./hg/mouseStuff/mousePoster/mousePoster.c
./hg/mouseStuff/axtFilter/axtFilter.c
./hg/mouseStuff/mafToClustalw/mafToClustalw.c
./hg/mouseStuff/chainIndex/chainIndex.c
./hg/mouseStuff/netToBedWithId/netToBedWithId.c
./hg/mouseStuff/chainSplit/chainSplit.c
./hg/mouseStuff/axtToPsl/axtToPsl.c
./hg/mouseStuff/chainSort/chainSort.c
./hg/mouseStuff/axtDropSelf/axtDropSelf.c
./hg/mouseStuff/chainFilter/chainFilter.c
./hg/mouseStuff/lavToAxt/lavToAxt.c
./hg/mouseStuff/chainInfo/chainInfo.h
./hg/mouseStuff/chainInfo/chainInfo.c
./hg/mouseStuff/afsCombine/afsCombine.c
./hg/rtdbWebUpdate/rtdbWebUpdate.c
./hg/splitFaIntoContigs/splitFaIntoContigs.c
./hg/affyTransciptome/htmlFromBeds.c
./hg/affyTransciptome/trackFromLifts.c
./hg/affyTransciptome/maxTranscriptomeExps.c
./hg/affyTransciptome/groupSamples.c
./hg/affyTransciptome/nmerParasolGenome.c
./hg/affyTransciptome/averageZoomLevels.c
./hg/affyTransciptome/avgTranscriptomeExps.c
./hg/affyTransciptome/affyPairsToSample.c
./hg/affyTransciptome/scaleSampleFiles.c
./hg/affyTransciptome/normalizeSampleFile.c
./hg/affyTransciptome/mergeAffyFiles.c
./hg/affyTransciptome/affyTransLiftedToSample.c
./hg/affyTransciptome/pickCassettePcrPrimers.c
./hg/affyTransciptome/samplesForCoordinates.c
./hg/affyTransciptome/nmerAlign.c
./hg/affyTransciptome/bulkChr2XRegression.c